miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9634 3' -59 NC_002577.1 + 78427 0.65 0.84647
Target:  5'- cGUCGGACucgaauuGCCGaCcgaugaguuuaacgGGCGGA-GCGUGGGa -3'
miRNA:   3'- -UAGCCUG-------CGGC-G--------------CCGCUUgCGCAUCC- -5'
9634 3' -59 NC_002577.1 + 136632 0.66 0.841015
Target:  5'- -cCGGAgGCCaUGGCGGAgaucgcuCGCGUGGc -3'
miRNA:   3'- uaGCCUgCGGcGCCGCUU-------GCGCAUCc -5'
9634 3' -59 NC_002577.1 + 160705 0.66 0.841015
Target:  5'- -cCGGAgGCCaUGGCGGAgaucgcuCGCGUGGc -3'
miRNA:   3'- uaGCCUgCGGcGCCGCUU-------GCGCAUCc -5'
9634 3' -59 NC_002577.1 + 137382 0.66 0.83944
Target:  5'- --gGGGCGCCaggagcgaacucucGCGGCuAAUGCGgcGGc -3'
miRNA:   3'- uagCCUGCGG--------------CGCCGcUUGCGCauCC- -5'
9634 3' -59 NC_002577.1 + 106517 0.66 0.833874
Target:  5'- uUCGGACGCCGCaucuaGGacuuCGC-UAGGa -3'
miRNA:   3'- uAGCCUGCGGCG-----CCgcuuGCGcAUCC- -5'
9634 3' -59 NC_002577.1 + 10100 0.66 0.825778
Target:  5'- -cCGcGACGCCGCGGCccguccaugugGuAAUGCG-GGGa -3'
miRNA:   3'- uaGC-CUGCGGCGCCG-----------C-UUGCGCaUCC- -5'
9634 3' -59 NC_002577.1 + 123514 0.66 0.825778
Target:  5'- -cCGcGACGCCGCGGCccguccaugugGuAAUGCG-GGGa -3'
miRNA:   3'- uaGC-CUGCGGCGCCG-----------C-UUGCGCaUCC- -5'
9634 3' -59 NC_002577.1 + 25638 0.66 0.817518
Target:  5'- gAUUGGugGaC-CGGCGAACGCG-AGa -3'
miRNA:   3'- -UAGCCugCgGcGCCGCUUGCGCaUCc -5'
9634 3' -59 NC_002577.1 + 69041 0.66 0.817518
Target:  5'- aGUUaGACGUgGUGGCGGAagcCGCGUuGGGg -3'
miRNA:   3'- -UAGcCUGCGgCGCCGCUU---GCGCA-UCC- -5'
9634 3' -59 NC_002577.1 + 128166 0.66 0.817518
Target:  5'- cGUCGGAUGCgG-GGCGAugaGCGgGUauuuAGGc -3'
miRNA:   3'- -UAGCCUGCGgCgCCGCU---UGCgCA----UCC- -5'
9634 3' -59 NC_002577.1 + 141737 0.66 0.817518
Target:  5'- -cCGGA-GCCGUGGCugugGugUGUGUAGGg -3'
miRNA:   3'- uaGCCUgCGGCGCCG----CuuGCGCAUCC- -5'
9634 3' -59 NC_002577.1 + 75317 0.66 0.817518
Target:  5'- -aCGuGACGCCGCGucGCGAgguuuuagaGCGgGUAGc -3'
miRNA:   3'- uaGC-CUGCGGCGC--CGCU---------UGCgCAUCc -5'
9634 3' -59 NC_002577.1 + 5448 0.66 0.817518
Target:  5'- cGUCGGAUGCgG-GGCGAugaGCGgGUauuuAGGc -3'
miRNA:   3'- -UAGCCUGCGgCgCCGCU---UGCgCA----UCC- -5'
9634 3' -59 NC_002577.1 + 155601 0.66 0.817518
Target:  5'- -cCGGA-GCCGUGGCugugGugUGUGUAGGg -3'
miRNA:   3'- uaGCCUgCGGCGCCG----CuuGCGCAUCC- -5'
9634 3' -59 NC_002577.1 + 121878 0.66 0.799668
Target:  5'- -cCGGACGCCGgagagaacgacgcCGGaGGGCGCGgaccGGGc -3'
miRNA:   3'- uaGCCUGCGGC-------------GCCgCUUGCGCa---UCC- -5'
9634 3' -59 NC_002577.1 + 11736 0.66 0.799668
Target:  5'- -cCGGACGCCGgagagaacgacgcCGGaGGGCGCGgaccGGGc -3'
miRNA:   3'- uaGCCUGCGGC-------------GCCgCUUGCGCa---UCC- -5'
9634 3' -59 NC_002577.1 + 139253 0.67 0.780302
Target:  5'- aGUUGGAggcauagaagcCGCCGCGGCGccggcugcagucgaGAcCGCGgGGGg -3'
miRNA:   3'- -UAGCCU-----------GCGGCGCCGC--------------UU-GCGCaUCC- -5'
9634 3' -59 NC_002577.1 + 158085 0.67 0.780302
Target:  5'- aGUUGGAggcauagaagcCGCCGCGGCGccggcugcagucgaGAcCGCGgGGGg -3'
miRNA:   3'- -UAGCCU-----------GCGGCGCCGC--------------UU-GCGCaUCC- -5'
9634 3' -59 NC_002577.1 + 7536 0.67 0.77401
Target:  5'- -gCGGAcaucaCGCCGgGGuCGAACGCGg--- -3'
miRNA:   3'- uaGCCU-----GCGGCgCC-GCUUGCGCaucc -5'
9634 3' -59 NC_002577.1 + 126078 0.67 0.77401
Target:  5'- -gCGGAcaucaCGCCGgGGuCGAACGCGg--- -3'
miRNA:   3'- uaGCCU-----GCGGCgCC-GCUUGCGCaucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.