miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9640 5' -70.1 NC_002577.1 + 141503 0.66 0.334151
Target:  5'- cGCAUcgcuucuuGCCCCCCgCCCaacaccaccaCCaCCCCGCCc- -3'
miRNA:   3'- -UGUG--------UGGGGGGgGGG----------GG-GGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 155835 0.66 0.33415
Target:  5'- cGCAUcgcuucuuGCCCCCCgCCCaacaccaccaCCaCCCCGCCc- -3'
miRNA:   3'- -UGUG--------UGGGGGGgGGG----------GG-GGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 126168 0.66 0.327302
Target:  5'- aGCAUGCCCUguaCCCCaCCCCCCUuCUAa -3'
miRNA:   3'- -UGUGUGGGGg--GGGG-GGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 7446 0.66 0.327302
Target:  5'- aGCAUGCCCUguaCCCCaCCCCCCUuCUAa -3'
miRNA:   3'- -UGUGUGGGGg--GGGG-GGGGGGGcGGUa -5'
9640 5' -70.1 NC_002577.1 + 50953 0.66 0.327302
Target:  5'- uCGCGCCCCCCauucgCCCUUCUCCCGagGUa -3'
miRNA:   3'- uGUGUGGGGGG-----GGGGGGGGGGCggUA- -5'
9640 5' -70.1 NC_002577.1 + 156682 0.66 0.325268
Target:  5'- --cUACCCCCCUCCcucuacgcagacauCCUCCCCGUCu- -3'
miRNA:   3'- uguGUGGGGGGGGG--------------GGGGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 154814 0.66 0.320559
Target:  5'- uCACGUCUCCCUUUCCCCCCUGCa-- -3'
miRNA:   3'- uGUGUGGGGGGGGGGGGGGGGCGgua -5'
9640 5' -70.1 NC_002577.1 + 5905 0.66 0.31392
Target:  5'- ----cCCCCCCCCUCCCCUCUuCCu- -3'
miRNA:   3'- uguguGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 127709 0.66 0.31392
Target:  5'- ----cCCCCCCCCUCCCCUCUuCCu- -3'
miRNA:   3'- uguguGGGGGGGGGGGGGGGGcGGua -5'
9640 5' -70.1 NC_002577.1 + 156609 0.66 0.307385
Target:  5'- ---aGCCCCCCUCCUCCUa-CGCCAc -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGggGCGGUa -5'
9640 5' -70.1 NC_002577.1 + 140729 0.66 0.307385
Target:  5'- ---aGCCCCCCUCCUCCUa-CGCCAc -3'
miRNA:   3'- ugugUGGGGGGGGGGGGGggGCGGUa -5'
9640 5' -70.1 NC_002577.1 + 129194 0.66 0.300955
Target:  5'- cACGCGCCCCCCCauaCUcggcgcgcguaCCCgCgGCCAUc -3'
miRNA:   3'- -UGUGUGGGGGGGg--GG-----------GGGgGgCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 124797 0.66 0.300955
Target:  5'- uGCGCguGCCCCUCCCCCaacuaaCCCUUCGCgCGc -3'
miRNA:   3'- -UGUG--UGGGGGGGGGG------GGGGGGCG-GUa -5'
9640 5' -70.1 NC_002577.1 + 4420 0.66 0.300955
Target:  5'- cACGCGCCCCCCCauaCUcggcgcgcguaCCCgCgGCCAUc -3'
miRNA:   3'- -UGUGUGGGGGGGg--GG-----------GGGgGgCGGUA- -5'
9640 5' -70.1 NC_002577.1 + 8817 0.66 0.300955
Target:  5'- uGCGCguGCCCCUCCCCCaacuaaCCCUUCGCgCGc -3'
miRNA:   3'- -UGUG--UGGGGGGGGGG------GGGGGGCG-GUa -5'
9640 5' -70.1 NC_002577.1 + 83166 0.67 0.288408
Target:  5'- -aGCgACUCgUCCCCUUCCCCCGCUAc -3'
miRNA:   3'- ugUG-UGGGgGGGGGGGGGGGGCGGUa -5'
9640 5' -70.1 NC_002577.1 + 153449 0.67 0.288408
Target:  5'- gGCACACUCCaCgCUauUUCCCCCCGCCc- -3'
miRNA:   3'- -UGUGUGGGG-GgGG--GGGGGGGGCGGua -5'
9640 5' -70.1 NC_002577.1 + 11562 0.67 0.281684
Target:  5'- ----uCCCCCCCUCCCCCuucuucuCCCGuCCGa -3'
miRNA:   3'- uguguGGGGGGGGGGGGG-------GGGC-GGUa -5'
9640 5' -70.1 NC_002577.1 + 122052 0.67 0.281684
Target:  5'- ----uCCCCCCCUCCCCCuucuucuCCCGuCCGa -3'
miRNA:   3'- uguguGGGGGGGGGGGGG-------GGGC-GGUa -5'
9640 5' -70.1 NC_002577.1 + 126037 0.67 0.280475
Target:  5'- cCAUuuaucuuCCCCCCCgcguaaacaauuauCCCUCCCCCGCgCGUc -3'
miRNA:   3'- uGUGu------GGGGGGG--------------GGGGGGGGGCG-GUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.