miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9642 5' -45.5 NC_002577.1 + 6066 0.66 0.999982
Target:  5'- --aGGGAGgaagaa-GGGAGGGGGGa -3'
miRNA:   3'- uagCCUUUaaauaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 127548 0.66 0.999982
Target:  5'- --aGGGAGgaagaa-GGGAGGGGGGa -3'
miRNA:   3'- uagCCUUUaaauaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 126419 0.67 0.999922
Target:  5'- --aGGAAAauggUcgUgagGGGAGGGGGGg -3'
miRNA:   3'- uagCCUUUaa--AuaAa--UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 7195 0.67 0.999922
Target:  5'- --aGGAAAauggUcgUgagGGGAGGGGGGg -3'
miRNA:   3'- uagCCUUUaa--AuaAa--UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 126178 0.67 0.999897
Target:  5'- -gCGGggGgggggUUAggccUUGGAAGGGGGa- -3'
miRNA:   3'- uaGCCuuUa----AAUa---AAUCUUCCCCCca -5'
9642 5' -45.5 NC_002577.1 + 7436 0.67 0.999897
Target:  5'- -gCGGggGgggggUUAggccUUGGAAGGGGGa- -3'
miRNA:   3'- uaGCCuuUa----AAUa---AAUCUUCCCCCca -5'
9642 5' -45.5 NC_002577.1 + 43496 0.67 0.999891
Target:  5'- cAUCGGcuucgggGUUUAuAAGGGGGGg -3'
miRNA:   3'- -UAGCCuuuaaa-UAAAUcUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 156638 0.68 0.999864
Target:  5'- cAUgGGAAGUUcacgaUAggUUcGggGGGGGGUg -3'
miRNA:   3'- -UAgCCUUUAA-----AUa-AAuCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 9512 0.68 0.999771
Target:  5'- cUUGGggGg------GGggGGGGGGa -3'
miRNA:   3'- uAGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 140700 0.68 0.999771
Target:  5'- cAUgGGAAGUUcacgauagUUcGggGGGGGGUg -3'
miRNA:   3'- -UAgCCUUUAAaua-----AAuCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 124102 0.68 0.999771
Target:  5'- cUUGGggGg------GGggGGGGGGa -3'
miRNA:   3'- uAGCCuuUaaauaaaUCuuCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 154244 0.68 0.999707
Target:  5'- uUCGGGAuuagUAg--GGAugAGGGGGGa -3'
miRNA:   3'- uAGCCUUuaa-AUaaaUCU--UCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 155315 0.68 0.999699
Target:  5'- uUUGGggG-------GGggGGGGGGUg -3'
miRNA:   3'- uAGCCuuUaaauaaaUCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 142023 0.68 0.999699
Target:  5'- uUUGGggG-------GGggGGGGGGUg -3'
miRNA:   3'- uAGCCuuUaaauaaaUCuuCCCCCCA- -5'
9642 5' -45.5 NC_002577.1 + 6154 0.69 0.99966
Target:  5'- --gGGAGGgggggaagGGAGGGGGGGa -3'
miRNA:   3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 6128 0.69 0.99966
Target:  5'- --gGGAGGgggggaagGGAGGGGGGGa -3'
miRNA:   3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 127460 0.69 0.99966
Target:  5'- --gGGAGGgggggaagGGAGGGGGGGa -3'
miRNA:   3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 127486 0.69 0.99966
Target:  5'- --gGGAGGgggggaagGGAGGGGGGGa -3'
miRNA:   3'- uagCCUUUaaauaaa-UCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 138683 0.69 0.999569
Target:  5'- cUCGGAGAcggcccguuccagucUggaacgGGAAGGGGGGa -3'
miRNA:   3'- uAGCCUUU---------------AaauaaaUCUUCCCCCCa -5'
9642 5' -45.5 NC_002577.1 + 1170 0.69 0.999493
Target:  5'- -aUGGAAucuacggggGGggGGGGGGUu -3'
miRNA:   3'- uaGCCUUuaaauaaa-UCuuCCCCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.