miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9652 5' -56.1 NC_002577.1 + 163247 0.74 0.541068
Target:  5'- gCCGGCGGGCA--UGUCCGgcGGGGauGCa -3'
miRNA:   3'- -GGCCGUUCGUgaGCAGGCuuCCUC--CG- -5'
9652 5' -56.1 NC_002577.1 + 162644 0.72 0.640815
Target:  5'- uCCGGUGcGGCcC-CGUCCGAcuuugccguGGGAGGCu -3'
miRNA:   3'- -GGCCGU-UCGuGaGCAGGCU---------UCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 162531 0.66 0.932581
Target:  5'- gCCGcGCAGGCcUUCGgaaaggacgcggcgaUCUGAguccAGGGGGCc -3'
miRNA:   3'- -GGC-CGUUCGuGAGC---------------AGGCU----UCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 162453 0.66 0.912596
Target:  5'- aCGGCAAagucggacggggccGCAC-CGgaUCCGGAGGAG-Cg -3'
miRNA:   3'- gGCCGUU--------------CGUGaGC--AGGCUUCCUCcG- -5'
9652 5' -56.1 NC_002577.1 + 161702 0.68 0.861139
Target:  5'- gCGGCcucuGGCGCcCGgccacaagggCCG-AGGAGGCu -3'
miRNA:   3'- gGCCGu---UCGUGaGCa---------GGCuUCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 161208 0.69 0.81277
Target:  5'- aCCGGCccgcccaggcGGCGCUC-UCCGGuAGGcagAGGCg -3'
miRNA:   3'- -GGCCGu---------UCGUGAGcAGGCU-UCC---UCCG- -5'
9652 5' -56.1 NC_002577.1 + 160769 0.68 0.861139
Target:  5'- gCCGGCAuagccAGCAaUCGgaguUCCaauGGGGGGCu -3'
miRNA:   3'- -GGCCGU-----UCGUgAGC----AGGcu-UCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 158854 0.71 0.680923
Target:  5'- cCCGaGCGaagGGUACgaggCCGggGGAGGCc -3'
miRNA:   3'- -GGC-CGU---UCGUGagcaGGCuuCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 158319 0.67 0.875732
Target:  5'- gCGGgaggGAGCGCgguggCGggCGggGGGGGCa -3'
miRNA:   3'- gGCCg---UUCGUGa----GCagGCuuCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 158058 0.67 0.882715
Target:  5'- gCCGGCu-GCAgUCGagaCCGcGGGGGGa -3'
miRNA:   3'- -GGCCGuuCGUgAGCa--GGCuUCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 157201 0.7 0.730117
Target:  5'- gCUGGCGGGCcaccaacucgaGCUCuUCuCGAGGGGGGg -3'
miRNA:   3'- -GGCCGUUCG-----------UGAGcAG-GCUUCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 157071 0.78 0.317797
Target:  5'- aCGGCGGGCugggACUCGgucgcUCCGGAGGGGaGCg -3'
miRNA:   3'- gGCCGUUCG----UGAGC-----AGGCUUCCUC-CG- -5'
9652 5' -56.1 NC_002577.1 + 156604 0.68 0.868538
Target:  5'- -gGGgGGGCACgc--CCGAGGGAGGg -3'
miRNA:   3'- ggCCgUUCGUGagcaGGCUUCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 155256 0.78 0.332312
Target:  5'- cCCgGGCGAGCACUCucCCGAGGGcGGUa -3'
miRNA:   3'- -GG-CCGUUCGUGAGcaGGCUUCCuCCG- -5'
9652 5' -56.1 NC_002577.1 + 153663 0.7 0.739745
Target:  5'- uCCcGCAAGCGCUUGUgcccaCCGGgcGGGGGGa -3'
miRNA:   3'- -GGcCGUUCGUGAGCA-----GGCU--UCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 153475 0.66 0.914334
Target:  5'- cCCGGUggGCACaagCGcUUGcGGGAGGa -3'
miRNA:   3'- -GGCCGuuCGUGa--GCaGGCuUCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 142082 0.78 0.332312
Target:  5'- cCCgGGCGAGCACUCucCCGAGGGcGGUa -3'
miRNA:   3'- -GG-CCGUUCGUGAGcaGGCUUCCuCCG- -5'
9652 5' -56.1 NC_002577.1 + 140733 0.68 0.868538
Target:  5'- -gGGgGGGCACgc--CCGAGGGAGGg -3'
miRNA:   3'- ggCCgUUCGUGagcaGGCUUCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 140267 0.78 0.317797
Target:  5'- aCGGCGGGCugggACUCGgucgcUCCGGAGGGGaGCg -3'
miRNA:   3'- gGCCGUUCG----UGAGC-----AGGCUUCCUC-CG- -5'
9652 5' -56.1 NC_002577.1 + 140137 0.7 0.730117
Target:  5'- gCUGGCGGGCcaccaacucgaGCUCuUCuCGAGGGGGGg -3'
miRNA:   3'- -GGCCGUUCG-----------UGAGcAG-GCUUCCUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.