miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9656 5' -58.4 NC_002577.1 + 163064 0.69 0.681439
Target:  5'- cGCCGGAcaugcccGCCGGCCg--CGCGG-GCGc -3'
miRNA:   3'- -CGGCCU-------UGGUCGGguaGCGUCuCGCc -5'
9656 5' -58.4 NC_002577.1 + 161470 0.68 0.749929
Target:  5'- aUCGGGgcgGCCAGgCCAUCGgaCGGAGCa- -3'
miRNA:   3'- cGGCCU---UGGUCgGGUAGC--GUCUCGcc -5'
9656 5' -58.4 NC_002577.1 + 161028 0.67 0.795383
Target:  5'- cGCCuGGGCgGGCCgGUgG-AGAGCGGc -3'
miRNA:   3'- -CGGcCUUGgUCGGgUAgCgUCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 160548 0.73 0.433313
Target:  5'- uCCGGGACCuuCCCAaaCGCGGAcGCGGg -3'
miRNA:   3'- cGGCCUUGGucGGGUa-GCGUCU-CGCC- -5'
9656 5' -58.4 NC_002577.1 + 160404 0.67 0.794505
Target:  5'- gGCCGGggUCguaacaaGGCUC--CGCGGAGCGc -3'
miRNA:   3'- -CGGCCuuGG-------UCGGGuaGCGUCUCGCc -5'
9656 5' -58.4 NC_002577.1 + 160060 0.66 0.845263
Target:  5'- cUCGGAGCCAcGaCCCga-GCAGAGCc- -3'
miRNA:   3'- cGGCCUUGGU-C-GGGuagCGUCUCGcc -5'
9656 5' -58.4 NC_002577.1 + 159168 0.66 0.852977
Target:  5'- gGCCcGAACCAGCaCCggC-CGGccGGCGGg -3'
miRNA:   3'- -CGGcCUUGGUCG-GGuaGcGUC--UCGCC- -5'
9656 5' -58.4 NC_002577.1 + 156962 0.66 0.829294
Target:  5'- uCCGGGGaaagaGGCCUGUCGUGGAGaGGg -3'
miRNA:   3'- cGGCCUUgg---UCGGGUAGCGUCUCgCC- -5'
9656 5' -58.4 NC_002577.1 + 156879 0.66 0.837367
Target:  5'- uCCGGAGcgaccgagucCCAGCCCGcCGUAaaucGAGCGu -3'
miRNA:   3'- cGGCCUU----------GGUCGGGUaGCGU----CUCGCc -5'
9656 5' -58.4 NC_002577.1 + 155599 0.69 0.661669
Target:  5'- uGCCGGAGCCGuGgCUGUgGUguguguaGGGGCGGg -3'
miRNA:   3'- -CGGCCUUGGU-CgGGUAgCG-------UCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 141739 0.69 0.661669
Target:  5'- uGCCGGAGCCGuGgCUGUgGUguguguaGGGGCGGg -3'
miRNA:   3'- -CGGCCUUGGU-CgGGUAgCG-------UCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 140458 0.66 0.837367
Target:  5'- uCCGGAGcgaccgagucCCAGCCCGcCGUAaaucGAGCGu -3'
miRNA:   3'- cGGCCUU----------GGUCGGGUaGCGU----CUCGCc -5'
9656 5' -58.4 NC_002577.1 + 140376 0.66 0.829294
Target:  5'- uCCGGGGaaagaGGCCUGUCGUGGAGaGGg -3'
miRNA:   3'- cGGCCUUgg---UCGGGUAGCGUCUCgCC- -5'
9656 5' -58.4 NC_002577.1 + 138170 0.66 0.852977
Target:  5'- gGCCcGAACCAGCaCCggC-CGGccGGCGGg -3'
miRNA:   3'- -CGGcCUUGGUCG-GGuaGcGUC--UCGCC- -5'
9656 5' -58.4 NC_002577.1 + 137278 0.66 0.845263
Target:  5'- cUCGGAGCCAcGaCCCga-GCAGAGCc- -3'
miRNA:   3'- cGGCCUUGGU-C-GGGuagCGUCUCGcc -5'
9656 5' -58.4 NC_002577.1 + 136933 0.67 0.794505
Target:  5'- gGCCGGggUCguaacaaGGCUC--CGCGGAGCGc -3'
miRNA:   3'- -CGGCCuuGG-------UCGGGuaGCGUCUCGCc -5'
9656 5' -58.4 NC_002577.1 + 136789 0.73 0.433313
Target:  5'- uCCGGGACCuuCCCAaaCGCGGAcGCGGg -3'
miRNA:   3'- cGGCCUUGGucGGGUa-GCGUCU-CGCC- -5'
9656 5' -58.4 NC_002577.1 + 136310 0.67 0.795383
Target:  5'- cGCCuGGGCgGGCCgGUgG-AGAGCGGc -3'
miRNA:   3'- -CGGcCUUGgUCGGgUAgCgUCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 135867 0.68 0.749929
Target:  5'- aUCGGGgugGCCAGgCCAUCGgaCGGAGCa- -3'
miRNA:   3'- cGGCCU---UGGUCgGGUAGC--GUCUCGcc -5'
9656 5' -58.4 NC_002577.1 + 134264 0.69 0.681439
Target:  5'- cGCCGGAcaugcccGCCGGCCg--CGCGG-GCGc -3'
miRNA:   3'- -CGGCCU-------UGGUCGGguaGCGUCuCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.