Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9656 | 5' | -58.4 | NC_002577.1 | + | 11700 | 0.7 | 0.603052 |
Target: 5'- aGCCGG--CCGGCCUgcaguUCGggaAGAGCGGg -3' miRNA: 3'- -CGGCCuuGGUCGGGu----AGCg--UCUCGCC- -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 38358 | 0.68 | 0.749929 |
Target: 5'- uGCCGGcGCCgaguucaauuGGCCUcuggCGCGG-GCGGa -3' miRNA: 3'- -CGGCCuUGG----------UCGGGua--GCGUCuCGCC- -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 161470 | 0.68 | 0.749929 |
Target: 5'- aUCGGGgcgGCCAGgCCAUCGgaCGGAGCa- -3' miRNA: 3'- cGGCCU---UGGUCgGGUAGC--GUCUCGcc -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 126068 | 0.68 | 0.721416 |
Target: 5'- cGCCGGggUCGaacGCgggaaaauaaaaCCGUUGCGGGGgGGg -3' miRNA: 3'- -CGGCCuuGGU---CG------------GGUAGCGUCUCgCC- -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 91765 | 0.68 | 0.721416 |
Target: 5'- aCCGuAGCCAGCCgCAcggCGCgucuaAGGGCGGa -3' miRNA: 3'- cGGCcUUGGUCGG-GUa--GCG-----UCUCGCC- -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 31922 | 0.69 | 0.692252 |
Target: 5'- uGCCGGcuCCuacGCCCAUCGCGaAGUa- -3' miRNA: 3'- -CGGCCuuGGu--CGGGUAGCGUcUCGcc -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 134264 | 0.69 | 0.681439 |
Target: 5'- cGCCGGAcaugcccGCCGGCCg--CGCGG-GCGc -3' miRNA: 3'- -CGGCCU-------UGGUCGGguaGCGUCuCGCc -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 141739 | 0.69 | 0.661669 |
Target: 5'- uGCCGGAGCCGuGgCUGUgGUguguguaGGGGCGGg -3' miRNA: 3'- -CGGCCUUGGU-CgGGUAgCG-------UCUCGCC- -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 11120 | 0.7 | 0.603052 |
Target: 5'- aGCgCGGGACCGcgguaauaaagcGCCCgccGUCGCGGAuCGGa -3' miRNA: 3'- -CG-GCCUUGGU------------CGGG---UAGCGUCUcGCC- -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 124288 | 0.68 | 0.759249 |
Target: 5'- cGCUa-GGCUGGCCCGgggCGCGGAcGCGGu -3' miRNA: 3'- -CGGccUUGGUCGGGUa--GCGUCU-CGCC- -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 160404 | 0.67 | 0.794505 |
Target: 5'- gGCCGGggUCguaacaaGGCUC--CGCGGAGCGc -3' miRNA: 3'- -CGGCCuuGG-------UCGGGuaGCGUCUCGCc -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 136310 | 0.67 | 0.795383 |
Target: 5'- cGCCuGGGCgGGCCgGUgG-AGAGCGGc -3' miRNA: 3'- -CGGcCUUGgUCGGgUAgCgUCUCGCC- -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 159168 | 0.66 | 0.852977 |
Target: 5'- gGCCcGAACCAGCaCCggC-CGGccGGCGGg -3' miRNA: 3'- -CGGcCUUGGUCG-GGuaGcGUC--UCGCC- -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 160060 | 0.66 | 0.845263 |
Target: 5'- cUCGGAGCCAcGaCCCga-GCAGAGCc- -3' miRNA: 3'- cGGCCUUGGU-C-GGGuagCGUCUCGcc -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 140458 | 0.66 | 0.837367 |
Target: 5'- uCCGGAGcgaccgagucCCAGCCCGcCGUAaaucGAGCGu -3' miRNA: 3'- cGGCCUU----------GGUCGGGUaGCGU----CUCGCc -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 9368 | 0.66 | 0.832544 |
Target: 5'- -gCGGAGCCGcGCCCGggacgCGUcguuucuugcgaaacGGGGUGGa -3' miRNA: 3'- cgGCCUUGGU-CGGGUa----GCG---------------UCUCGCC- -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 156962 | 0.66 | 0.829294 |
Target: 5'- uCCGGGGaaagaGGCCUGUCGUGGAGaGGg -3' miRNA: 3'- cGGCCUUgg---UCGGGUAGCGUCUCgCC- -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 132435 | 0.66 | 0.821052 |
Target: 5'- cGCCGGGAgaCGGCggcuUCAUCGCGcacGCGGg -3' miRNA: 3'- -CGGCCUUg-GUCG----GGUAGCGUcu-CGCC- -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 28034 | 0.67 | 0.812648 |
Target: 5'- aUCGGGA-CGGUCUAUCGCgAGAGCuuGGg -3' miRNA: 3'- cGGCCUUgGUCGGGUAGCG-UCUCG--CC- -5' |
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9656 | 5' | -58.4 | NC_002577.1 | + | 8248 | 0.67 | 0.795383 |
Target: 5'- -aCGGAgagacccgcccGCCAGCCUcUCcggccCGGAGCGGa -3' miRNA: 3'- cgGCCU-----------UGGUCGGGuAGc----GUCUCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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