miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
975 3' -50.5 NC_000902.1 + 39226 0.66 0.946732
Target:  5'- cCCGCCAAUAuuuucccACGUc-CCGuCAGCACGc -3'
miRNA:   3'- -GGUGGUUGU-------UGUAauGGCcGUCGUGC- -5'
975 3' -50.5 NC_000902.1 + 25612 0.66 0.942314
Target:  5'- aCCugCGGCAAuCAgcGCCagaacGGCAGC-CGa -3'
miRNA:   3'- -GGugGUUGUU-GUaaUGG-----CCGUCGuGC- -5'
975 3' -50.5 NC_000902.1 + 59721 0.66 0.941808
Target:  5'- aUCAUCGACAACGccGCUGaaaucgaagaauuGCAGCGCa -3'
miRNA:   3'- -GGUGGUUGUUGUaaUGGC-------------CGUCGUGc -5'
975 3' -50.5 NC_000902.1 + 50508 0.66 0.937133
Target:  5'- gCgACCAGCGGCGUUuuCCGGU-GC-CGg -3'
miRNA:   3'- -GgUGGUUGUUGUAAu-GGCCGuCGuGC- -5'
975 3' -50.5 NC_000902.1 + 35071 0.66 0.937133
Target:  5'- -aACCGuCAGCAUUAaguCCGGUgAGCAUGc -3'
miRNA:   3'- ggUGGUuGUUGUAAU---GGCCG-UCGUGC- -5'
975 3' -50.5 NC_000902.1 + 25103 0.66 0.931665
Target:  5'- gCACCGGCAGCuccggaGCCGGaaGGCAUc -3'
miRNA:   3'- gGUGGUUGUUGuaa---UGGCCg-UCGUGc -5'
975 3' -50.5 NC_000902.1 + 40163 0.67 0.925908
Target:  5'- gCGCCGACGACAgcuccugucugUACUGuucaGCAGgGCGg -3'
miRNA:   3'- gGUGGUUGUUGUa----------AUGGC----CGUCgUGC- -5'
975 3' -50.5 NC_000902.1 + 31813 0.67 0.925908
Target:  5'- -aGCCAGCAACAgucuucccaccUGCUGGCAGgCAa- -3'
miRNA:   3'- ggUGGUUGUUGUa----------AUGGCCGUC-GUgc -5'
975 3' -50.5 NC_000902.1 + 60457 0.67 0.925908
Target:  5'- aCCGCCAGCuACua-ACUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGuUGuaaUGGCCGUCGugc -5'
975 3' -50.5 NC_000902.1 + 48639 0.67 0.919861
Target:  5'- gUACCuGAUAugGUUGCUGGCGGUGUGg -3'
miRNA:   3'- gGUGG-UUGUugUAAUGGCCGUCGUGC- -5'
975 3' -50.5 NC_000902.1 + 35941 0.67 0.913526
Target:  5'- aCACCAACGACug-GCggcugaaugccaCGGCAGC-Ca -3'
miRNA:   3'- gGUGGUUGUUGuaaUG------------GCCGUCGuGc -5'
975 3' -50.5 NC_000902.1 + 24692 0.67 0.906903
Target:  5'- aCCGCCAGCGucCAUUccugucGCUGGCGGUu-- -3'
miRNA:   3'- -GGUGGUUGUu-GUAA------UGGCCGUCGugc -5'
975 3' -50.5 NC_000902.1 + 48455 0.67 0.905544
Target:  5'- gCCACCGGCAaaaauauccugcACAguugcgacacCCGGCAGCcccauACGg -3'
miRNA:   3'- -GGUGGUUGU------------UGUaau-------GGCCGUCG-----UGC- -5'
975 3' -50.5 NC_000902.1 + 49627 0.67 0.899996
Target:  5'- uUCAuUCAACAACug-GCUGGCAGCuuccCGg -3'
miRNA:   3'- -GGU-GGUUGUUGuaaUGGCCGUCGu---GC- -5'
975 3' -50.5 NC_000902.1 + 24470 0.68 0.892808
Target:  5'- gUCACCGGuCAguGCAUUugCGGCGGauaaACu -3'
miRNA:   3'- -GGUGGUU-GU--UGUAAugGCCGUCg---UGc -5'
975 3' -50.5 NC_000902.1 + 49716 0.68 0.885344
Target:  5'- uUCGCCcACAACAggaagugacGCCGGaAGCACa -3'
miRNA:   3'- -GGUGGuUGUUGUaa-------UGGCCgUCGUGc -5'
975 3' -50.5 NC_000902.1 + 28525 0.68 0.877608
Target:  5'- aUCuCUGGCGGCGUUGauucuuucCCGGuCAGCACGa -3'
miRNA:   3'- -GGuGGUUGUUGUAAU--------GGCC-GUCGUGC- -5'
975 3' -50.5 NC_000902.1 + 40656 0.68 0.877608
Target:  5'- uUACCGGCAAac---CCGGCGGCAa- -3'
miRNA:   3'- gGUGGUUGUUguaauGGCCGUCGUgc -5'
975 3' -50.5 NC_000902.1 + 48560 0.68 0.869608
Target:  5'- aUCACUGACAGCcUUACCGGUuGC-Cu -3'
miRNA:   3'- -GGUGGUUGUUGuAAUGGCCGuCGuGc -5'
975 3' -50.5 NC_000902.1 + 31907 0.68 0.861349
Target:  5'- gCGCCuguuCAGCAgacACCGGCguuuaAGCACa -3'
miRNA:   3'- gGUGGuu--GUUGUaa-UGGCCG-----UCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.