miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9762 3' -57.1 NC_002577.1 + 47158 0.66 0.889326
Target:  5'- cGGACGCGgcCCGuugacgaccAUGGCcgGAUGCCGCu -3'
miRNA:   3'- uCUUGCGC--GGU---------UGCCGa-CUGCGGUGu -5'
9762 3' -57.1 NC_002577.1 + 137384 0.66 0.881799
Target:  5'- cGGGgGCGCCAggagcgaacucucGCGGCUaAUGCgGCGg -3'
miRNA:   3'- uCUUgCGCGGU-------------UGCCGAcUGCGgUGU- -5'
9762 3' -57.1 NC_002577.1 + 159649 0.66 0.875444
Target:  5'- aGGGGCgucgcauuucgGCGCUGGCuGCaGACGCCAUAg -3'
miRNA:   3'- -UCUUG-----------CGCGGUUGcCGaCUGCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 160535 0.66 0.86818
Target:  5'- ----gGCGaUCGACGGCaucgUGGCGCCGCc -3'
miRNA:   3'- ucuugCGC-GGUUGCCG----ACUGCGGUGu -5'
9762 3' -57.1 NC_002577.1 + 136803 0.66 0.86818
Target:  5'- ----gGCGaUCGACGGCaucgUGGCGCCGCc -3'
miRNA:   3'- ucuugCGC-GGUUGCCG----ACUGCGGUGu -5'
9762 3' -57.1 NC_002577.1 + 160380 0.66 0.867442
Target:  5'- cGGAGCGCGaCCGGCccucggacguuccGGaaGAgGCCGCGu -3'
miRNA:   3'- -UCUUGCGC-GGUUG-------------CCgaCUgCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 136957 0.66 0.867442
Target:  5'- cGGAGCGCGaCCGGCccucggacguuccGGaaGAgGCCGCGu -3'
miRNA:   3'- -UCUUGCGC-GGUUG-------------CCgaCUgCGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 155336 0.66 0.863721
Target:  5'- aGGAGCGCGUCGAgGGUuaaugucuccuuaccUcGGCGUCGCu -3'
miRNA:   3'- -UCUUGCGCGGUUgCCG---------------A-CUGCGGUGu -5'
9762 3' -57.1 NC_002577.1 + 140108 0.66 0.863721
Target:  5'- --cGCGCGCCAcaAcauagcguggcucccCGGCUGGCggGCCACc -3'
miRNA:   3'- ucuUGCGCGGU--U---------------GCCGACUG--CGGUGu -5'
9762 3' -57.1 NC_002577.1 + 157230 0.66 0.863721
Target:  5'- --cGCGCGCCAcaAcauagcguggcucccCGGCUGGCggGCCACc -3'
miRNA:   3'- ucuUGCGCGGU--U---------------GCCGACUG--CGGUGu -5'
9762 3' -57.1 NC_002577.1 + 158362 0.66 0.853032
Target:  5'- -uGGCGCGCCGccgucaccgccGCGGCgcuACGCCGa- -3'
miRNA:   3'- ucUUGCGCGGU-----------UGCCGac-UGCGGUgu -5'
9762 3' -57.1 NC_002577.1 + 134100 0.66 0.853032
Target:  5'- gGGGAUGCaGCguGCGGCUcGGCcuacugGCCGCGc -3'
miRNA:   3'- -UCUUGCG-CGguUGCCGA-CUG------CGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 81273 0.66 0.853032
Target:  5'- cGAG-GCGCgCAGCGGC-GACuGCUGCAg -3'
miRNA:   3'- uCUUgCGCG-GUUGCCGaCUG-CGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 45198 0.66 0.853032
Target:  5'- -aAACcCGCCAggagGCGGCgaucGACGCCAUc -3'
miRNA:   3'- ucUUGcGCGGU----UGCCGa---CUGCGGUGu -5'
9762 3' -57.1 NC_002577.1 + 122635 0.66 0.853032
Target:  5'- gAGAACGuCGUCuACGGCUcGCGuUCGCGg -3'
miRNA:   3'- -UCUUGC-GCGGuUGCCGAcUGC-GGUGU- -5'
9762 3' -57.1 NC_002577.1 + 10979 0.66 0.853031
Target:  5'- gAGAACGuCGUCuACGGCUcGCGuUCGCGg -3'
miRNA:   3'- -UCUUGC-GCGGuUGCCGAcUGC-GGUGU- -5'
9762 3' -57.1 NC_002577.1 + 163228 0.66 0.853031
Target:  5'- gGGGAUGCaGCguGCGGCUcGGCcuacugGCCGCGc -3'
miRNA:   3'- -UCUUGCG-CGguUGCCGA-CUG------CGGUGU- -5'
9762 3' -57.1 NC_002577.1 + 138976 0.66 0.853031
Target:  5'- -uGGCGCGCCGccgucaccgccGCGGCgcuACGCCGa- -3'
miRNA:   3'- ucUUGCGCGGU-----------UGCCGac-UGCGGUgu -5'
9762 3' -57.1 NC_002577.1 + 11601 0.67 0.837097
Target:  5'- cGGAACGCGau-GCGGCgggggaaaaGGCGCCGa- -3'
miRNA:   3'- -UCUUGCGCgguUGCCGa--------CUGCGGUgu -5'
9762 3' -57.1 NC_002577.1 + 122013 0.67 0.837096
Target:  5'- cGGAACGCGau-GCGGCgggggaaaaGGCGCCGa- -3'
miRNA:   3'- -UCUUGCGCgguUGCCGa--------CUGCGGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.