miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9763 5' -57.7 NC_002577.1 + 27034 0.66 0.842728
Target:  5'- ----gGGGGCCGCCGUAgauguuuucaagAGCgGCc -3'
miRNA:   3'- aauagUCCCGGCGGCGUaa----------UCGgCGc -5'
9763 5' -57.7 NC_002577.1 + 138979 0.66 0.83784
Target:  5'- -gAUUGGcGcGCCGCCGUcaccGCCGCGg -3'
miRNA:   3'- aaUAGUC-C-CGGCGGCGuaauCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 158359 0.66 0.83784
Target:  5'- -gAUUGGcGcGCCGCCGUcaccGCCGCGg -3'
miRNA:   3'- aaUAGUC-C-CGGCGGCGuaauCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 112097 0.66 0.83784
Target:  5'- -aGUCAcGGGCCauGCUGCGgaacuGCCGUa -3'
miRNA:   3'- aaUAGU-CCCGG--CGGCGUaau--CGGCGc -5'
9763 5' -57.7 NC_002577.1 + 5599 0.66 0.829546
Target:  5'- aUAUCAGaGGaaGCCGCucggaccGCUGCGa -3'
miRNA:   3'- aAUAGUC-CCggCGGCGuaau---CGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 132222 0.66 0.821072
Target:  5'- -gGUCGGGGCuaggagCGcCCGCGUgcgcgaugaAGCCGCc -3'
miRNA:   3'- aaUAGUCCCG------GC-GGCGUAa--------UCGGCGc -5'
9763 5' -57.7 NC_002577.1 + 13905 0.66 0.821072
Target:  5'- ---gCAGGGUCGCCGg--UAGUCGUu -3'
miRNA:   3'- aauaGUCCCGGCGGCguaAUCGGCGc -5'
9763 5' -57.7 NC_002577.1 + 1392 0.66 0.821072
Target:  5'- -gGUCGGGGCuaggagCGcCCGCGUgcgcgaugaAGCCGCc -3'
miRNA:   3'- aaUAGUCCCG------GC-GGCGUAa--------UCGGCGc -5'
9763 5' -57.7 NC_002577.1 + 142642 0.66 0.812426
Target:  5'- ----aGGGGCUGCCGCcggcaCCGCGc -3'
miRNA:   3'- aauagUCCCGGCGGCGuaaucGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 154694 0.66 0.812426
Target:  5'- ----aGGGGCUGCCGCcggcaCCGCGc -3'
miRNA:   3'- aauagUCCCGGCGGCGuaaucGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 97872 0.67 0.794653
Target:  5'- --uUCucGGGCCGacauuguuuuCCGCGacAGCCGCGg -3'
miRNA:   3'- aauAGu-CCCGGC----------GGCGUaaUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 133934 0.67 0.794653
Target:  5'- ---cCAGGGuCCGCCGCGcgcauGCuCGCu -3'
miRNA:   3'- aauaGUCCC-GGCGGCGUaau--CG-GCGc -5'
9763 5' -57.7 NC_002577.1 + 163393 0.67 0.794653
Target:  5'- ---cCAGGGuCCGCCGCGcgcauGCuCGCu -3'
miRNA:   3'- aauaGUCCC-GGCGGCGUaau--CG-GCGc -5'
9763 5' -57.7 NC_002577.1 + 158256 0.67 0.794653
Target:  5'- -cGUCGGGGCCGaCGaugUAGUCGUc -3'
miRNA:   3'- aaUAGUCCCGGCgGCguaAUCGGCGc -5'
9763 5' -57.7 NC_002577.1 + 139082 0.67 0.794653
Target:  5'- -cGUCGGGGCCGaCGaugUAGUCGUc -3'
miRNA:   3'- aaUAGUCCCGGCgGCguaAUCGGCGc -5'
9763 5' -57.7 NC_002577.1 + 47 0.67 0.776294
Target:  5'- -----cGGGCUGCCGCAcc--CCGCGa -3'
miRNA:   3'- aauaguCCCGGCGGCGUaaucGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 133566 0.67 0.776294
Target:  5'- -----cGGGCUGCCGCAcc--CCGCGa -3'
miRNA:   3'- aauaguCCCGGCGGCGUaaucGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 161076 0.67 0.747813
Target:  5'- ---aCAGGuGCuCGCCuGgGUUGGCCGUGu -3'
miRNA:   3'- aauaGUCC-CG-GCGG-CgUAAUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 136262 0.67 0.747813
Target:  5'- ---aCAGGuGCuCGCCuGgGUUGGCCGUGu -3'
miRNA:   3'- aauaGUCC-CG-GCGG-CgUAAUCGGCGC- -5'
9763 5' -57.7 NC_002577.1 + 109242 0.68 0.697433
Target:  5'- -aAUCAGGaaGCCGCUGCGUUgcuuccaacggaaGGCgGCa -3'
miRNA:   3'- aaUAGUCC--CGGCGGCGUAA-------------UCGgCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.