miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9765 5' -60.8 NC_002577.1 + 122498 0.66 0.718824
Target:  5'- -cCCGCuuccCGAuuGGCCCGGACgGGCGu -3'
miRNA:   3'- caGGCG----GCUcuCCGGGCUUGgUCGUg -5'
9765 5' -60.8 NC_002577.1 + 123602 0.66 0.718824
Target:  5'- uUCCGCCuc---GUCCaGAGCCAGCGCg -3'
miRNA:   3'- cAGGCGGcucucCGGG-CUUGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 10011 0.66 0.718824
Target:  5'- uUCCGCCuc---GUCCaGAGCCAGCGCg -3'
miRNA:   3'- cAGGCGGcucucCGGG-CUUGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 11115 0.66 0.718824
Target:  5'- -cCCGCuuccCGAuuGGCCCGGACgGGCGu -3'
miRNA:   3'- caGGCG----GCUcuCCGGGCUUGgUCGUg -5'
9765 5' -60.8 NC_002577.1 + 8383 0.66 0.709173
Target:  5'- cUCCGCCGuuc-GCCCG-GCCgAGCGCc -3'
miRNA:   3'- cAGGCGGCucucCGGGCuUGG-UCGUG- -5'
9765 5' -60.8 NC_002577.1 + 12039 0.66 0.709173
Target:  5'- -gUCGcCCGGGucgucGCCCGggUCGGCGCc -3'
miRNA:   3'- caGGC-GGCUCuc---CGGGCuuGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 125231 0.66 0.709173
Target:  5'- cUCCGCCGuuc-GCCCG-GCCgAGCGCc -3'
miRNA:   3'- cAGGCGGCucucCGGGCuUGG-UCGUG- -5'
9765 5' -60.8 NC_002577.1 + 150291 0.66 0.709173
Target:  5'- aUCUGuaGAuGAGGCCCGu-CCuGCGCu -3'
miRNA:   3'- cAGGCggCU-CUCCGGGCuuGGuCGUG- -5'
9765 5' -60.8 NC_002577.1 + 3467 0.66 0.69946
Target:  5'- aGUCCGCCGGcaGGGCUCGAGCaa--ACa -3'
miRNA:   3'- -CAGGCGGCUc-UCCGGGCUUGgucgUG- -5'
9765 5' -60.8 NC_002577.1 + 160122 0.66 0.69946
Target:  5'- -cCCG-CGAGaAGGCCCGAcgGCUgcaacgcguGGCGCg -3'
miRNA:   3'- caGGCgGCUC-UCCGGGCU--UGG---------UCGUG- -5'
9765 5' -60.8 NC_002577.1 + 137216 0.66 0.69946
Target:  5'- -cCCG-CGAGaAGGCCCGAcgGCUgcaacgcguGGCGCg -3'
miRNA:   3'- caGGCgGCUC-UCCGGGCU--UGG---------UCGUG- -5'
9765 5' -60.8 NC_002577.1 + 130147 0.66 0.69946
Target:  5'- aGUCCGCCGGcaGGGCUCGAGCaa--ACa -3'
miRNA:   3'- -CAGGCGGCUc-UCCGGGCUUGgucgUG- -5'
9765 5' -60.8 NC_002577.1 + 122468 0.66 0.689694
Target:  5'- uUCCGCUGGccGGCCCGccguCCgaaAGCGCg -3'
miRNA:   3'- cAGGCGGCUcuCCGGGCuu--GG---UCGUG- -5'
9765 5' -60.8 NC_002577.1 + 11146 0.66 0.689694
Target:  5'- uUCCGCUGGccGGCCCGccguCCgaaAGCGCg -3'
miRNA:   3'- cAGGCGGCUcuCCGGGCuu--GG---UCGUG- -5'
9765 5' -60.8 NC_002577.1 + 86808 0.66 0.679883
Target:  5'- aUCCGCCaGAGcgGGGCCgGGACUgccaaucgAGCAa -3'
miRNA:   3'- cAGGCGG-CUC--UCCGGgCUUGG--------UCGUg -5'
9765 5' -60.8 NC_002577.1 + 153580 0.67 0.671021
Target:  5'- -gCUGCCccguuuaggcaaacGGGGCCCG-GCCGGCGCg -3'
miRNA:   3'- caGGCGGcu------------CUCCGGGCuUGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 126974 0.67 0.670035
Target:  5'- ------gGGGAGGCCUGAacgGCCGGCGCg -3'
miRNA:   3'- caggcggCUCUCCGGGCU---UGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 6639 0.67 0.670035
Target:  5'- ------gGGGAGGCCUGAacgGCCGGCGCg -3'
miRNA:   3'- caggcggCUCUCCGGGCU---UGGUCGUG- -5'
9765 5' -60.8 NC_002577.1 + 108886 0.67 0.670035
Target:  5'- -gCCGCCaGGGGGCaauagcggUCGAGCCugAGCGCu -3'
miRNA:   3'- caGGCGGcUCUCCG--------GGCUUGG--UCGUG- -5'
9765 5' -60.8 NC_002577.1 + 156258 0.67 0.650261
Target:  5'- --aUGCCGAaaGGGGCUCGugcGCCGGCAa -3'
miRNA:   3'- cagGCGGCU--CUCCGGGCu--UGGUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.