Results 1 - 20 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 160689 | 0.66 | 0.973409 |
Target: 5'- ---gGGaacCGUccauaaUGCGCGcgGGGUCGCgCCa -3' miRNA: 3'- cuuaCC---GCA------ACGCGCuuUCCAGCG-GG- -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 136649 | 0.66 | 0.973409 |
Target: 5'- ---gGGaacCGUccauaaUGCGCGcgGGGUCGCgCCa -3' miRNA: 3'- cuuaCC---GCA------ACGCGCuuUCCAGCG-GG- -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 17597 | 0.66 | 0.972588 |
Target: 5'- gGGAUGGCGcauuaucgcccagugGCGCGAAAcgggcGGagGUCCg -3' miRNA: 3'- -CUUACCGCaa-------------CGCGCUUU-----CCagCGGG- -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 89283 | 0.66 | 0.97231 |
Target: 5'- gGAAUGGUGUcguggaucgcacaGCGCGAAA--UCGCCa -3' miRNA: 3'- -CUUACCGCAa------------CGCGCUUUccAGCGGg -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 159532 | 0.66 | 0.970599 |
Target: 5'- ---cGGCGaUGUGCGGuag--CGCCCa -3' miRNA: 3'- cuuaCCGCaACGCGCUuuccaGCGGG- -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 137805 | 0.66 | 0.970599 |
Target: 5'- ---cGGCGaUGUGCGGuag--CGCCCa -3' miRNA: 3'- cuuaCCGCaACGCGCUuuccaGCGGG- -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 124439 | 0.66 | 0.967583 |
Target: 5'- --cUGGCGaugGCGCGGGcGGGggaGUCCg -3' miRNA: 3'- cuuACCGCaa-CGCGCUU-UCCag-CGGG- -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 134743 | 0.66 | 0.967583 |
Target: 5'- --uUGGCGgaGCgcaggGCGAAAGGaccccgcuuUCGCCg -3' miRNA: 3'- cuuACCGCaaCG-----CGCUUUCC---------AGCGGg -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 153714 | 0.66 | 0.967583 |
Target: 5'- uGggUGGCGaagGUGCu-GAGGa-GCCCg -3' miRNA: 3'- -CuuACCGCaa-CGCGcuUUCCagCGGG- -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 9175 | 0.66 | 0.967583 |
Target: 5'- --cUGGCGaugGCGCGGGcGGGggaGUCCg -3' miRNA: 3'- cuuACCGCaa-CGCGCUU-UCCag-CGGG- -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 162584 | 0.66 | 0.967583 |
Target: 5'- --uUGGCGgaGCgcaggGCGAAAGGaccccgcuuUCGCCg -3' miRNA: 3'- cuuACCGCaaCG-----CGCUUUCC---------AGCGGg -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 155639 | 0.66 | 0.964354 |
Target: 5'- uGGUGGUGUUGgGCGggGGGcaagaaGCg- -3' miRNA: 3'- cUUACCGCAACgCGCuuUCCag----CGgg -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 126956 | 0.66 | 0.964354 |
Target: 5'- cGAGaGGCGUggGgGgGggGGGagGCCUg -3' miRNA: 3'- -CUUaCCGCAa-CgCgCuuUCCagCGGG- -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 6657 | 0.66 | 0.964354 |
Target: 5'- cGAGaGGCGUggGgGgGggGGGagGCCUg -3' miRNA: 3'- -CUUaCCGCAa-CgCgCuuUCCagCGGG- -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 10960 | 0.66 | 0.964354 |
Target: 5'- ----cGCGUU-CGCG-GGGGUCGCCg -3' miRNA: 3'- cuuacCGCAAcGCGCuUUCCAGCGGg -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 122654 | 0.66 | 0.964354 |
Target: 5'- ----cGCGUU-CGCG-GGGGUCGCCg -3' miRNA: 3'- cuuacCGCAAcGCGCuUUCCAGCGGg -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 67524 | 0.66 | 0.964354 |
Target: 5'- ---cGGCGUUcGCaGCuuuGGAAGGcacaUCGCCCc -3' miRNA: 3'- cuuaCCGCAA-CG-CG---CUUUCC----AGCGGG- -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 141699 | 0.66 | 0.964354 |
Target: 5'- uGGUGGUGUUGgGCGggGGGcaagaaGCg- -3' miRNA: 3'- cUUACCGCAACgCGCuuUCCag----CGgg -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 130710 | 0.66 | 0.960905 |
Target: 5'- aGggUaGGCGUcgagaaaauCGCGAccGAGGgugCGCCCu -3' miRNA: 3'- -CuuA-CCGCAac-------GCGCU--UUCCa--GCGGG- -5' |
|||||||
9773 | 3' | -53.7 | NC_002577.1 | + | 2904 | 0.66 | 0.960905 |
Target: 5'- aGggUaGGCGUcgagaaaauCGCGAccGAGGgugCGCCCu -3' miRNA: 3'- -CuuA-CCGCAac-------GCGCU--UUCCa--GCGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home