miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9775 5' -62.6 NC_002577.1 + 16715 0.66 0.66538
Target:  5'- -aGCCUCACGGCggcuUCUacgCGUUaCGCGCGg -3'
miRNA:   3'- ugCGGGGUGCCG----AGA---GCAGgGCGUGC- -5'
9775 5' -62.6 NC_002577.1 + 96683 0.66 0.664416
Target:  5'- --aCCCgACGGCcaauaggUCUCGUgUCCGCGCGc -3'
miRNA:   3'- ugcGGGgUGCCG-------AGAGCA-GGGCGUGC- -5'
9775 5' -62.6 NC_002577.1 + 3150 0.66 0.662486
Target:  5'- cGCGCgUCuggacuuuaccgggGCGGCU-UCGUCCCGCgGCGu -3'
miRNA:   3'- -UGCGgGG--------------UGCCGAgAGCAGGGCG-UGC- -5'
9775 5' -62.6 NC_002577.1 + 130463 0.66 0.662486
Target:  5'- cGCGCgUCuggacuuuaccgggGCGGCU-UCGUCCCGCgGCGu -3'
miRNA:   3'- -UGCGgGG--------------UGCCGAgAGCAGGGCG-UGC- -5'
9775 5' -62.6 NC_002577.1 + 162585 0.66 0.655726
Target:  5'- cCGCgCCCGCGG-UUUCGguUCCCGgGCa -3'
miRNA:   3'- uGCG-GGGUGCCgAGAGC--AGGGCgUGc -5'
9775 5' -62.6 NC_002577.1 + 134743 0.66 0.655726
Target:  5'- cCGCgCCCGCGG-UUUCGguUCCCGgGCa -3'
miRNA:   3'- uGCG-GGGUGCCgAGAGC--AGGGCgUGc -5'
9775 5' -62.6 NC_002577.1 + 158135 0.66 0.636375
Target:  5'- cCGCCaCCGC-GCUC-CcUCCCGCGCu -3'
miRNA:   3'- uGCGG-GGUGcCGAGaGcAGGGCGUGc -5'
9775 5' -62.6 NC_002577.1 + 139203 0.66 0.636375
Target:  5'- cCGCCaCCGC-GCUC-CcUCCCGCGCu -3'
miRNA:   3'- uGCGG-GGUGcCGAGaGcAGGGCGUGc -5'
9775 5' -62.6 NC_002577.1 + 134069 0.66 0.636375
Target:  5'- aGCGCCCgCGCGGCcggCgggcaUGUCCgGCGgGg -3'
miRNA:   3'- -UGCGGG-GUGCCGa--Ga----GCAGGgCGUgC- -5'
9775 5' -62.6 NC_002577.1 + 154658 0.66 0.636375
Target:  5'- -gGUCCCGauUGGCUCUgGUCUCGCu-- -3'
miRNA:   3'- ugCGGGGU--GCCGAGAgCAGGGCGugc -5'
9775 5' -62.6 NC_002577.1 + 163259 0.66 0.636375
Target:  5'- aGCGCCCgCGCGGCcggCgggcaUGUCCgGCGgGg -3'
miRNA:   3'- -UGCGGG-GUGCCGa--Ga----GCAGGgCGUgC- -5'
9775 5' -62.6 NC_002577.1 + 4422 0.67 0.617011
Target:  5'- cGCGCCCCcccauacuCGGCgcgCGUaCCCGCGg- -3'
miRNA:   3'- -UGCGGGGu-------GCCGagaGCA-GGGCGUgc -5'
9775 5' -62.6 NC_002577.1 + 160238 0.67 0.617011
Target:  5'- -gGCCCCGCaaGUUCUCccgagCCCGUGCGg -3'
miRNA:   3'- ugCGGGGUGc-CGAGAGca---GGGCGUGC- -5'
9775 5' -62.6 NC_002577.1 + 9608 0.67 0.617011
Target:  5'- gACGgagCCCGCGGUg--CGUaCCUGCACGg -3'
miRNA:   3'- -UGCg--GGGUGCCGagaGCA-GGGCGUGC- -5'
9775 5' -62.6 NC_002577.1 + 137100 0.67 0.617011
Target:  5'- -gGCCCCGCaaGUUCUCccgagCCCGUGCGg -3'
miRNA:   3'- ugCGGGGUGc-CGAGAGca---GGGCGUGC- -5'
9775 5' -62.6 NC_002577.1 + 129192 0.67 0.617011
Target:  5'- cGCGCCCCcccauacuCGGCgcgCGUaCCCGCGg- -3'
miRNA:   3'- -UGCGGGGu-------GCCGagaGCA-GGGCGUgc -5'
9775 5' -62.6 NC_002577.1 + 124006 0.67 0.617011
Target:  5'- gACGgagCCCGCGGUg--CGUaCCUGCACGg -3'
miRNA:   3'- -UGCg--GGGUGCCGagaGCA-GGGCGUGC- -5'
9775 5' -62.6 NC_002577.1 + 130579 0.67 0.597688
Target:  5'- uGCGCUCCGCaGCgccUUCGUCCCGgAg- -3'
miRNA:   3'- -UGCGGGGUGcCGa--GAGCAGGGCgUgc -5'
9775 5' -62.6 NC_002577.1 + 3034 0.67 0.597688
Target:  5'- uGCGCUCCGCaGCgccUUCGUCCCGgAg- -3'
miRNA:   3'- -UGCGGGGUGcCGa--GAGCAGGGCgUgc -5'
9775 5' -62.6 NC_002577.1 + 122060 0.67 0.588057
Target:  5'- uCGCuCCCGacggGGCUCUCGUUCgGCGa- -3'
miRNA:   3'- uGCG-GGGUg---CCGAGAGCAGGgCGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.