miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9776 5' -55.6 NC_002577.1 + 117154 0.66 0.936637
Target:  5'- cCaGCGCUGCGCCaAUuacgacucuacaUCGGACGCUc -3'
miRNA:   3'- cGcCGCGAUGCGGcUA------------AGUCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 130338 0.66 0.936637
Target:  5'- aCGGCGCUGggcucCGuCCGAUgcucucgaucUCAGGCAgCa -3'
miRNA:   3'- cGCCGCGAU-----GC-GGCUA----------AGUCUGUgGa -5'
9776 5' -55.6 NC_002577.1 + 158560 0.66 0.936637
Target:  5'- uCGGCGUaGCGCCGcggCGGugACg- -3'
miRNA:   3'- cGCCGCGaUGCGGCuaaGUCugUGga -5'
9776 5' -55.6 NC_002577.1 + 93659 0.66 0.936637
Target:  5'- aGCGGgGCUGgguuCGCCGuaaaUCGGugGCa- -3'
miRNA:   3'- -CGCCgCGAU----GCGGCua--AGUCugUGga -5'
9776 5' -55.6 NC_002577.1 + 3276 0.66 0.936637
Target:  5'- aCGGCGCUGggcucCGuCCGAUgcucucgaucUCAGGCAgCa -3'
miRNA:   3'- cGCCGCGAU-----GC-GGCUA----------AGUCUGUgGa -5'
9776 5' -55.6 NC_002577.1 + 103338 0.66 0.936637
Target:  5'- -aGGUGCgcgACGCCGAUauUCAaAUGCCc -3'
miRNA:   3'- cgCCGCGa--UGCGGCUA--AGUcUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 138777 0.66 0.936637
Target:  5'- uCGGCGUaGCGCCGcggCGGugACg- -3'
miRNA:   3'- cGCCGCGaUGCGGCuaaGUCugUGga -5'
9776 5' -55.6 NC_002577.1 + 128570 0.66 0.933192
Target:  5'- uCGGCGCgcGCGCCGuguccccccucggcgGUgugcacgggaguaUCGGGCGCCg -3'
miRNA:   3'- cGCCGCGa-UGCGGC---------------UA-------------AGUCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 5044 0.66 0.933192
Target:  5'- uCGGCGCgcGCGCCGuguccccccucggcgGUgugcacgggaguaUCGGGCGCCg -3'
miRNA:   3'- cGCCGCGa-UGCGGC---------------UA-------------AGUCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 128826 0.66 0.931679
Target:  5'- aCGGCGCgGCGUCG--UCGcGCGCCg -3'
miRNA:   3'- cGCCGCGaUGCGGCuaAGUcUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 160724 0.66 0.931679
Target:  5'- gGCGGCGCcacgAUGCCG--UCGauCGCCUa -3'
miRNA:   3'- -CGCCGCGa---UGCGGCuaAGUcuGUGGA- -5'
9776 5' -55.6 NC_002577.1 + 136614 0.66 0.931679
Target:  5'- gGCGGCGCcacgAUGCCG--UCGauCGCCUa -3'
miRNA:   3'- -CGCCGCGa---UGCGGCuaAGUcuGUGGA- -5'
9776 5' -55.6 NC_002577.1 + 4787 0.66 0.931679
Target:  5'- aCGGCGCgGCGUCG--UCGcGCGCCg -3'
miRNA:   3'- cGCCGCGaUGCGGCuaAGUcUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 12109 0.66 0.921053
Target:  5'- --cGCGCUcggcGCGCCGGagCAGGCGCg- -3'
miRNA:   3'- cgcCGCGA----UGCGGCUaaGUCUGUGga -5'
9776 5' -55.6 NC_002577.1 + 125481 0.66 0.915386
Target:  5'- aGCGGCGCgaaACGCCcgcgcucucuaaGcgUCcgaaggccguacGGACACCg -3'
miRNA:   3'- -CGCCGCGa--UGCGG------------CuaAG------------UCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 8132 0.66 0.915386
Target:  5'- aGCGGCGCgaaACGCCcgcgcucucuaaGcgUCcgaaggccguacGGACACCg -3'
miRNA:   3'- -CGCCGCGa--UGCGG------------CuaAG------------UCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 123036 0.67 0.903346
Target:  5'- aGCGGCGUUcgGCCGcgUCGccGACGCg- -3'
miRNA:   3'- -CGCCGCGAugCGGCuaAGU--CUGUGga -5'
9776 5' -55.6 NC_002577.1 + 161248 0.67 0.903346
Target:  5'- cCGGcCGCggucaGCGCCGAaacgUCcGGCGCCg -3'
miRNA:   3'- cGCC-GCGa----UGCGGCUa---AGuCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 136090 0.67 0.903346
Target:  5'- cCGGcCGCggucaGCGCCGAaacgUCcGGCGCCg -3'
miRNA:   3'- cGCC-GCGa----UGCGGCUa---AGuCUGUGGa -5'
9776 5' -55.6 NC_002577.1 + 10578 0.67 0.903346
Target:  5'- aGCGGCGUUcgGCCGcgUCGccGACGCg- -3'
miRNA:   3'- -CGCCGCGAugCGGCuaAGU--CUGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.