miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9879 3' -47.8 NC_002641.1 + 155053 0.66 0.999789
Target:  5'- --cACUGGAAGGUaaacacaaacgauuuGACAUugCCgCCAa -3'
miRNA:   3'- cuaUGGCCUUUUA---------------UUGUAugGGgGGU- -5'
9879 3' -47.8 NC_002641.1 + 127420 0.66 0.999789
Target:  5'- --cACUGGAAGGUaaacacaaacgauuuGACAUugCCgCCAa -3'
miRNA:   3'- cuaUGGCCUUUUA---------------UUGUAugGGgGGU- -5'
9879 3' -47.8 NC_002641.1 + 49596 0.66 0.999766
Target:  5'- aGUAUUGGuAAAAUAuCGaguguUGCCCCCCGc -3'
miRNA:   3'- cUAUGGCC-UUUUAUuGU-----AUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 146391 0.66 0.999755
Target:  5'- --cGCCGGGAAGUGuaaauugucgacGCAaacggaaauccCCCCCCAc -3'
miRNA:   3'- cuaUGGCCUUUUAU------------UGUau---------GGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 136082 0.66 0.999755
Target:  5'- --cGCCGGGAAGUGuaaauugucgacGCAaacggaaauccCCCCCCAc -3'
miRNA:   3'- cuaUGGCCUUUUAU------------UGUau---------GGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 156059 0.66 0.999702
Target:  5'- --cGCCcGAAAAggAGgAUAUCCCCCAu -3'
miRNA:   3'- cuaUGGcCUUUUa-UUgUAUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 12742 0.66 0.999702
Target:  5'- aGUGCCGGAc-AUGAguUGCCCgCUAc -3'
miRNA:   3'- cUAUGGCCUuuUAUUguAUGGGgGGU- -5'
9879 3' -47.8 NC_002641.1 + 117319 0.66 0.999702
Target:  5'- aGGUuCCGGcgaGAAAUGACAUGCUCgaUCCAa -3'
miRNA:   3'- -CUAuGGCC---UUUUAUUGUAUGGG--GGGU- -5'
9879 3' -47.8 NC_002641.1 + 143740 0.66 0.999702
Target:  5'- cAUACCGGcGAGgacuggggGGCGU-UCCCCCAc -3'
miRNA:   3'- cUAUGGCCuUUUa-------UUGUAuGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 126413 0.66 0.999702
Target:  5'- --cGCCcGAAAAggAGgAUAUCCCCCAu -3'
miRNA:   3'- cuaUGGcCUUUUa-UUgUAUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 120021 0.66 0.999623
Target:  5'- uGGUuuCCGGuAAAUAuaaaggaGUACCCCCCc -3'
miRNA:   3'- -CUAu-GGCCuUUUAUug-----UAUGGGGGGu -5'
9879 3' -47.8 NC_002641.1 + 156201 0.66 0.999623
Target:  5'- ----aCGGAcuGUcacGACAUGCCCCCa- -3'
miRNA:   3'- cuaugGCCUuuUA---UUGUAUGGGGGgu -5'
9879 3' -47.8 NC_002641.1 + 3702 0.66 0.999623
Target:  5'- uGGUuuCCGGuAAAUAuaaaggaGUACCCCCCc -3'
miRNA:   3'- -CUAu-GGCCuUUUAUug-----UAUGGGGGGu -5'
9879 3' -47.8 NC_002641.1 + 151567 0.66 0.999623
Target:  5'- uGUACCaGAGGA-GACAaucCCCCCCGu -3'
miRNA:   3'- cUAUGGcCUUUUaUUGUau-GGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 126271 0.66 0.999623
Target:  5'- ----aCGGAcuGUcacGACAUGCCCCCa- -3'
miRNA:   3'- cuaugGCCUuuUA---UUGUAUGGGGGgu -5'
9879 3' -47.8 NC_002641.1 + 130906 0.66 0.999623
Target:  5'- uGUACCaGAGGA-GACAaucCCCCCCGu -3'
miRNA:   3'- cUAUGGcCUUUUaUUGUau-GGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 120749 0.66 0.999623
Target:  5'- ---cUCGGGAcAUGACcuUACUCCCCAu -3'
miRNA:   3'- cuauGGCCUUuUAUUGu-AUGGGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 127639 0.66 0.999526
Target:  5'- --aGCUGGGuucu-GCGUugCCCCCc -3'
miRNA:   3'- cuaUGGCCUuuuauUGUAugGGGGGu -5'
9879 3' -47.8 NC_002641.1 + 41242 0.66 0.999526
Target:  5'- aGUAUCGGcGAuuAUGGCAUGCcaauuuCCCCCGg -3'
miRNA:   3'- cUAUGGCCuUU--UAUUGUAUG------GGGGGU- -5'
9879 3' -47.8 NC_002641.1 + 154834 0.66 0.999526
Target:  5'- --aGCUGGGuucu-GCGUugCCCCCc -3'
miRNA:   3'- cuaUGGCCUuuuauUGUAugGGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.