miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9936 5' -52.6 NC_002641.1 + 133442 0.66 0.984719
Target:  5'- aUCgCGGgaGCUCGGauuuguagCGCCGCGGGCa -3'
miRNA:   3'- -AG-GUUggUGAGUUgua-----GUGGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 130426 0.67 0.963326
Target:  5'- aCCGAcCCACUCGcgcaacgaaagcccGCcUCACCcauCGGGUu -3'
miRNA:   3'- aGGUU-GGUGAGU--------------UGuAGUGGu--GCCCG- -5'
9936 5' -52.6 NC_002641.1 + 43676 0.68 0.958673
Target:  5'- cCCAACUACuUCAGCAgcaauacccacaaaCACCGCGGu- -3'
miRNA:   3'- aGGUUGGUG-AGUUGUa-------------GUGGUGCCcg -5'
9936 5' -52.6 NC_002641.1 + 152783 0.68 0.956781
Target:  5'- gCCGACCccaccgaAC-CAACAggaACCGCGGGg -3'
miRNA:   3'- aGGUUGG-------UGaGUUGUag-UGGUGCCCg -5'
9936 5' -52.6 NC_002641.1 + 153340 0.69 0.918892
Target:  5'- uUCCAGCaCGCgagCGuagacaguaaagGCGUCAuCCGCGGGg -3'
miRNA:   3'- -AGGUUG-GUGa--GU------------UGUAGU-GGUGCCCg -5'
9936 5' -52.6 NC_002641.1 + 5661 0.7 0.879921
Target:  5'- -gCGGCCGaUCAGCG-CGCgGCGGGCc -3'
miRNA:   3'- agGUUGGUgAGUUGUaGUGgUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 131277 0.71 0.849336
Target:  5'- uUCCAGCCAgCUaca-AUCugCACGGGa -3'
miRNA:   3'- -AGGUUGGU-GAguugUAGugGUGCCCg -5'
9936 5' -52.6 NC_002641.1 + 153755 0.71 0.841163
Target:  5'- gUCCGACCGCUUccgcuacuAGCGaCACCGCGcgugccgcGGCg -3'
miRNA:   3'- -AGGUUGGUGAG--------UUGUaGUGGUGC--------CCG- -5'
9936 5' -52.6 NC_002641.1 + 53067 0.75 0.647104
Target:  5'- gUCCAACCcguuuggcGCUCuAGCcauaggcuugauuGUCAUCGCGGGCa -3'
miRNA:   3'- -AGGUUGG--------UGAG-UUG-------------UAGUGGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 108243 0.67 0.964345
Target:  5'- uUCUAACCACacCAaacauACAUCGCCACuuGCg -3'
miRNA:   3'- -AGGUUGGUGa-GU-----UGUAGUGGUGccCG- -5'
9936 5' -52.6 NC_002641.1 + 128882 0.67 0.9676
Target:  5'- gUCgGACCGCUUgucgGACAUagcgcggaaCGCgCAUGGGCu -3'
miRNA:   3'- -AGgUUGGUGAG----UUGUA---------GUG-GUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 128323 0.67 0.9676
Target:  5'- cUCCGcauCCACcgCAGCAaaCGCCugGGGa -3'
miRNA:   3'- -AGGUu--GGUGa-GUUGUa-GUGGugCCCg -5'
9936 5' -52.6 NC_002641.1 + 5791 0.66 0.984719
Target:  5'- gUCCGGCCGCgcccaGACAgggcggagacgUGCCACagGGGCu -3'
miRNA:   3'- -AGGUUGGUGag---UUGUa----------GUGGUG--CCCG- -5'
9936 5' -52.6 NC_002641.1 + 129052 0.66 0.984719
Target:  5'- gCCucGCCGCUUGcCAgugggaaaagUGCCGCGGGCu -3'
miRNA:   3'- aGGu-UGGUGAGUuGUa---------GUGGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 130055 0.66 0.979442
Target:  5'- aUCCGGCCug-CAAgacaacaggaauuccCGUCcCCACGGGUc -3'
miRNA:   3'- -AGGUUGGugaGUU---------------GUAGuGGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 116985 0.66 0.978522
Target:  5'- cCCGcACCGCccguaCGACAUCGCCuCGGacGCg -3'
miRNA:   3'- aGGU-UGGUGa----GUUGUAGUGGuGCC--CG- -5'
9936 5' -52.6 NC_002641.1 + 129371 0.66 0.978522
Target:  5'- cUCCGACgGaUCucCAUCGgCugGGGCc -3'
miRNA:   3'- -AGGUUGgUgAGuuGUAGUgGugCCCG- -5'
9936 5' -52.6 NC_002641.1 + 85941 0.66 0.976092
Target:  5'- aUCCGGCaa--UAGCAUCGCCcUGGGUg -3'
miRNA:   3'- -AGGUUGgugaGUUGUAGUGGuGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 125221 0.67 0.973467
Target:  5'- gCCaAGCCGCUUGGCcgCAgCGCuGGCc -3'
miRNA:   3'- aGG-UUGGUGAGUUGuaGUgGUGcCCG- -5'
9936 5' -52.6 NC_002641.1 + 153906 0.67 0.970638
Target:  5'- cUUAGCCACUCG-----GCCACGcGGCg -3'
miRNA:   3'- aGGUUGGUGAGUuguagUGGUGC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.