miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9959 3' -53.5 NC_002641.1 + 118507 0.66 0.976348
Target:  5'- gCGCGuacucgggcccGGGgcGCAuuugucaguuuuuacAGUCcgccgcuaCCCCCGCCCCc -3'
miRNA:   3'- -GCGU-----------UCCauUGU---------------UUAG--------GGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 5215 0.66 0.976348
Target:  5'- gCGCGuacucgggcccGGGgcGCAuuugucaguuuuuacAGUCcgccgcuaCCCCCGCCCCc -3'
miRNA:   3'- -GCGU-----------UCCauUGU---------------UUAG--------GGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 154464 0.66 0.975338
Target:  5'- uCGCGGGGcAAUu--UCUCCCCGgcgaCCCg -3'
miRNA:   3'- -GCGUUCCaUUGuuuAGGGGGGUg---GGG- -5'
9959 3' -53.5 NC_002641.1 + 128008 0.66 0.975338
Target:  5'- uCGCGGGGcAAUu--UCUCCCCGgcgaCCCg -3'
miRNA:   3'- -GCGUUCCaUUGuuuAGGGGGGUg---GGG- -5'
9959 3' -53.5 NC_002641.1 + 12776 0.66 0.975081
Target:  5'- aCGCGuccgaugGGGUcguAGCGAAUCCagaauauaCCCACUUCg -3'
miRNA:   3'- -GCGU-------UCCA---UUGUUUAGGg-------GGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 149976 0.66 0.972675
Target:  5'- uGCuucu--AUGAA-CCCCCCGCCCCc -3'
miRNA:   3'- gCGuuccauUGUUUaGGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 152491 0.66 0.972675
Target:  5'- aGUGAGaagAACcuAUCCCCCUcaggcucgccgACCCCg -3'
miRNA:   3'- gCGUUCca-UUGuuUAGGGGGG-----------UGGGG- -5'
9959 3' -53.5 NC_002641.1 + 129982 0.66 0.972675
Target:  5'- aGUGAGaagAACcuAUCCCCCUcaggcucgccgACCCCg -3'
miRNA:   3'- gCGUUCca-UUGuuUAGGGGGG-----------UGGGG- -5'
9959 3' -53.5 NC_002641.1 + 132496 0.66 0.972675
Target:  5'- uGCuucu--AUGAA-CCCCCCGCCCCc -3'
miRNA:   3'- gCGuuccauUGUUUaGGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 22648 0.66 0.969513
Target:  5'- -aCAAGGUAGCGuuccaaAAUCCgCguuacgaaauucgCCGCCCCa -3'
miRNA:   3'- gcGUUCCAUUGU------UUAGGgG-------------GGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 86397 0.66 0.966738
Target:  5'- aGCAAGGUGACAAGUgCCggggaaCUGCuuagaCCCa -3'
miRNA:   3'- gCGUUCCAUUGUUUAgGGg-----GGUG-----GGG- -5'
9959 3' -53.5 NC_002641.1 + 114948 0.66 0.966738
Target:  5'- uGCGAcGGUGcagaagauaACAAG-CCCCCCAgagaguucaaaUCCCa -3'
miRNA:   3'- gCGUU-CCAU---------UGUUUaGGGGGGU-----------GGGG- -5'
9959 3' -53.5 NC_002641.1 + 134197 0.66 0.966738
Target:  5'- gGCcauAGGUAACGcg-CCCCCCAUaauuacaaaaCCUa -3'
miRNA:   3'- gCGu--UCCAUUGUuuaGGGGGGUG----------GGG- -5'
9959 3' -53.5 NC_002641.1 + 148275 0.66 0.966738
Target:  5'- gGCcauAGGUAACGcg-CCCCCCAUaauuacaaaaCCUa -3'
miRNA:   3'- gCGu--UCCAUUGUuuaGGGGGGUG----------GGG- -5'
9959 3' -53.5 NC_002641.1 + 10607 0.66 0.963451
Target:  5'- --gGAGGaGAgGGggCCUCCCAUCCCa -3'
miRNA:   3'- gcgUUCCaUUgUUuaGGGGGGUGGGG- -5'
9959 3' -53.5 NC_002641.1 + 130900 0.66 0.963451
Target:  5'- --aGAGGaGAC-AAUCCCCCCcguCCUCu -3'
miRNA:   3'- gcgUUCCaUUGuUUAGGGGGGu--GGGG- -5'
9959 3' -53.5 NC_002641.1 + 143543 0.66 0.963451
Target:  5'- gCGCGGaGUGGgGGAacgCCCCCCAgUCCu -3'
miRNA:   3'- -GCGUUcCAUUgUUUa--GGGGGGUgGGG- -5'
9959 3' -53.5 NC_002641.1 + 123821 0.66 0.963451
Target:  5'- cCGaCAGGG-AACu--UCCCUUCGCCCa -3'
miRNA:   3'- -GC-GUUCCaUUGuuuAGGGGGGUGGGg -5'
9959 3' -53.5 NC_002641.1 + 158652 0.66 0.963451
Target:  5'- cCGaCAGGG-AACu--UCCCUUCGCCCa -3'
miRNA:   3'- -GC-GUUCCaUUGuuuAGGGGGGUGGGg -5'
9959 3' -53.5 NC_002641.1 + 151573 0.66 0.963451
Target:  5'- --aGAGGaGAC-AAUCCCCCCcguCCUCu -3'
miRNA:   3'- gcgUUCCaUUGuUUAGGGGGGu--GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.