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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15850 | + | 145269 | 90 | 19 | -24.9 | YP_214101 | 5' arm 3' arm | ||
| 15728 | + | 60393 | 89 | 19 | -25 | YP_214057 | 5' arm 3' arm | ||
| 15857 | + | 149566 | 85 | 19 | -25 | YP_214104 | 5' arm 3' arm | ||
| 15755 | + | 76752 | 87 | 19 | -25.6 | YP_214064 | 5' arm 3' arm | ||
| 15719 | + | 56403 | 88 | 19 | -25.1 | YP_214055 | 5' arm 3' arm | ||
| 15895 | + | 194289 | 88 | 19 | -19.5 | YP_214139 | 5' arm 3' arm | ||
| 15864 | + | 160840 | 85 | 19 | -23 | 5' arm 3' arm | |||
| 15763 | + | 82600 | 88 | 19 | -30.7 | 5' arm 3' arm | |||
| 16201 | - | 196481 | 87 | 19 | -21.1 | YP_214140 | 5' arm 3' arm | ||
| 15746 | + | 73138 | 85 | 19 | -26.3 | 5' arm 3' arm | |||
| 15797 | + | 108719 | 89 | 19 | -21.1 | YP_214079 | 5' arm 3' arm | ||
| 15741 | + | 68800 | 89 | 19 | -25.3 | 5' arm 3' arm | |||
| 15854 | + | 148358 | 86 | 19 | -24.4 | YP_214103 | 5' arm 3' arm | ||
| 15777 | + | 91690 | 90 | 19 | -22.7 | 5' arm 3' arm | |||
| 15878 | + | 174042 | 82 | 19 | -24.7 | YP_214119 | 5' arm 3' arm | ||
| 15849 | + | 142913 | 89 | 19 | -20.2 | YP_214099 | 5' arm 3' arm | ||
| 15791 | + | 102346 | 87 | 19 | -26.8 | YP_214074 | 5' arm 3' arm | ||
| 15882 | + | 180771 | 88 | 19 | -21.5 | 5' arm 3' arm | |||
| 15721 | + | 57487 | 88 | 19 | -23.6 | 5' arm 3' arm | |||
| 15768 | + | 88977 | 89 | 19 | -22.8 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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