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| GenBank Identifier | RefSeq Acc. | Name |
| 30984428 | NC_004812.1 | Cercopithecine herpesvirus 1 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 21588 | - | 22681 | 88 | 23.5 | -28.8 | NP_851868 | 5' arm 3' arm | ||
| 21394 | + | 26127 | 87 | 23.5 | -23.1 | NP_851871 | 5' arm 3' arm | ||
| 21399 | + | 32941 | 90 | 23.5 | -23.9 | NP_851876 | 5' arm 3' arm | ||
| 21610 | - | 42146 | 89 | 23.5 | -20.8 | NP_851880 | 5' arm 3' arm | ||
| 21491 | + | 90853 | 87 | 23.5 | -23.7 | NP_851901 | 5' arm 3' arm | ||
| 21617 | - | 44762 | 88 | 23.5 | -21.7 | NP_851881 | 5' arm 3' arm | ||
| 21638 | - | 61136 | 85 | 23 | -29.2 | NP_851889 | 5' arm 3' arm | ||
| 21606 | - | 40238 | 88 | 23 | -34.1 | NP_851879 | 5' arm 3' arm | ||
| 21609 | - | 41208 | 81 | 23 | -23.1 | 5' arm 3' arm | |||
| 21460 | + | 71476 | 90 | 23 | -23.1 | NP_851896 | 5' arm 3' arm | ||
| 21720 | - | 137896 | 90 | 23 | -19.4 | NP_851922 | 5' arm 3' arm | ||
| 21506 | + | 99032 | 89 | 23 | -27.5 | NP_851906 | 5' arm 3' arm | ||
| 21438 | + | 59603 | 90 | 23 | -25.9 | NP_851889 | 5' arm 3' arm | ||
| 21590 | - | 23646 | 88 | 23 | -23.4 | NP_851869 | 5' arm 3' arm | ||
| 21700 | - | 114485 | 89 | 23 | -19.7 | NP_851916 | 5' arm 3' arm | ||
| 21542 | + | 135483 | 87 | 23 | -20.5 | NP_851921 | 5' arm 3' arm | ||
| 21639 | - | 61836 | 89 | 22.5 | -29.9 | 5' arm 3' arm | |||
| 21621 | - | 48925 | 89 | 22.5 | -23.4 | NP_851884 | 5' arm 3' arm | ||
| 21535 | + | 124234 | 90 | 22.5 | -23.6 | 5' arm 3' arm | |||
| 21645 | - | 64440 | 89 | 22.5 | -27.6 | NP_851890 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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