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| GenBank Identifier | RefSeq Acc. | Name |
| 82503188 | NC_007605.1 | Human herpesvirus 4 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 33521 | - | 66739 | 87 | 23 | -25.3 | YP_401656 | 5' arm 3' arm | ||
| 33529 | - | 81432 | 88 | 23 | -21.3 | YP_401669 | 5' arm 3' arm | ||
| 33450 | - | 18822 | 88 | 23 | -26.4 | YP_401640 | 5' arm 3' arm | ||
| 33377 | + | 140357 | 89 | 23 | -32.9 | 5' arm 3' arm | |||
| 33442 | - | 15750 | 88 | 23 | -26.4 | YP_401642 | 5' arm 3' arm | ||
| 33391 | + | 149722 | 89 | 23 | -20.7 | YP_401708 | 5' arm 3' arm | ||
| 33524 | - | 74563 | 90 | 23 | -24.4 | YP_401662 | 5' arm 3' arm | ||
| 33311 | + | 57300 | 86 | 23 | -22 | YP_401652 | 5' arm 3' arm | ||
| 33336 | + | 78632 | 90 | 23 | -22 | YP_401667 | 5' arm 3' arm | ||
| 33563 | - | 110539 | 90 | 23 | -28.3 | YP_401688 | 5' arm 3' arm | ||
| 33371 | + | 139335 | 89 | 23 | -23.6 | ebv-mir-BART1 | 5' arm 3' arm | ||
| 33473 | - | 28038 | 88 | 23 | -26.4 | YP_401638 | 5' arm 3' arm | ||
| 33458 | - | 21894 | 88 | 23 | -26.4 | YP_401638 | 5' arm 3' arm | ||
| 33466 | - | 24966 | 88 | 23 | -26.4 | YP_401643 | 5' arm 3' arm | ||
| 33297 | + | 52331 | 88 | 23 | -28.7 | YP_401652 | 5' arm 3' arm | ||
| 33298 | + | 52754 | 90 | 23 | -22.1 | YP_401652 | 5' arm 3' arm | ||
| 33434 | - | 12678 | 88 | 23 | -26.4 | YP_401642 | 5' arm 3' arm | ||
| 33481 | - | 31110 | 88 | 23 | -26.4 | YP_401642 | 5' arm 3' arm | ||
| 33288 | + | 47652 | 88 | 23 | -22.3 | YP_401650 | 5' arm 3' arm | ||
| 33568 | - | 115984 | 89 | 23 | -21.2 | YP_401692 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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