miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
29579	-	66916	80	22.5	-22	YP_068356		5' arm      3' arm
29627	-	110500	90	22.5	-19.7			5' arm      3' arm
29471	+	89056	90	22.5	-20.6	YP_068370		5' arm      3' arm
29594	-	79450	89	22.5	-26	YP_068363		5' arm      3' arm
29454	+	78647	81	22.5	-25.5	YP_068362		5' arm      3' arm
29402	+	26499	90	22.5	-20.4	YP_068333		5' arm      3' arm
29554	-	47114	88	22.5	-26.2	YP_068342		5' arm      3' arm
29409	+	29131	87	22.5	-30.5	YP_068334		5' arm      3' arm
29607	-	91545	86	22.5	-20.4	YP_068371		5' arm      3' arm
29475	+	92031	88	22.5	-23.4	YP_068372		5' arm      3' arm
29462	+	82370	87	22.5	-22.4	YP_068366		5' arm      3' arm
29588	-	69342	89	22.5	-21.9	YP_068356		5' arm      3' arm
29511	+	128795	90	22.5	-23.13			5' arm      3' arm
29514	+	134102	90	22.5	-19.7			5' arm      3' arm
29414	+	34770	90	22.5	-24.6	YP_068339		5' arm      3' arm
29592	-	73262	88	22	-25.7	YP_068359		5' arm      3' arm
29591	-	71887	87	22	-26.2			5' arm      3' arm
29622	-	102053	90	22	-28.1			5' arm      3' arm
29423	+	44419	88	22	-26.8	YP_068340		5' arm      3' arm
29519	+	142549	90	22	-28.1			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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