miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1152	+	596	87	22.5	-23.5			5' arm      3' arm
1212	-	161178	87	22.5	-23.5			5' arm      3' arm
1202	-	135416	90	22.5	-23.2			5' arm      3' arm
1195	-	104559	89	22.5	-20.6			5' arm      3' arm
1181	+	159519	90	25.5	-23.8	NP_051713		5' arm      3' arm
1183	-	2542	83	21.5	-24.9	NP_051713		5' arm      3' arm
1178	+	158529	90	21	-23.7	NP_051714		5' arm      3' arm
1185	-	3245	90	21	-23.7	NP_051714		5' arm      3' arm
1184	-	3055	90	19.5	-24.5	NP_051714		5' arm      3' arm
1210	-	158287	90	22.5	-28.2	NP_051715		5' arm      3' arm
1177	+	157144	86	22.5	-24.1	NP_051716		5' arm      3' arm
1186	-	4630	86	22.5	-24.1	NP_051716		5' arm      3' arm
1156	+	4983	89	20	-19.4	NP_051718		5' arm      3' arm
1188	-	5238	86	20.5	-20.1	NP_051718		5' arm      3' arm
1175	+	156536	86	20.5	-20.1	NP_051718		5' arm      3' arm
1157	+	6955	87	20.5	-21.2	NP_051719		5' arm      3' arm
1190	-	10708	90	20	-25.2	NP_051722		5' arm      3' arm
1205	-	150540	73	21	-25.1	NP_051722		5' arm      3' arm
1193	-	12991	90	20	-22.2	NP_051723		5' arm      3' arm
1160	+	27102	88	19.5	-22	NP_051742		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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