miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1161	+	42384	82	20	-20	NP_051756		5' arm      3' arm
1163	+	45928	90	20	-29.9	NP_051758		5' arm      3' arm
1162	+	44789	88	22.5	-20.6	NP_051758		5' arm      3' arm
1164	+	82031	89	24.5	-19.71	NP_051797		5' arm      3' arm
1194	-	89894	90	20	-24	NP_051805		5' arm      3' arm
1196	-	112242	89	21.5	-20.91	NP_051828		5' arm      3' arm
1197	-	119760	90	20.5	-23	NP_051840		5' arm      3' arm
1165	+	127575	87	20.5	-19.8	NP_051848		5' arm      3' arm
1198	-	127664	90	21.5	-30.6	NP_051848		5' arm      3' arm
1199	-	127948	87	20	-23.6	NP_051848		5' arm
1166	+	134626	90	22.5	-24.19	NP_051852		5' arm      3' arm
1201	-	134716	90	22.5	-27.09	NP_051852		5' arm      3' arm
1200	-	134248	89	20.5	-19.6	NP_051852		3' arm
1168	+	136461	87	20.5	-23	NP_051854		5' arm      3' arm
1167	+	136265	89	24	-27.6	NP_051854		5' arm      3' arm
1169	+	139762	89	23	-21.5	NP_051858		5' arm      3' arm
1170	+	142342	89	22	-24.1	NP_051861		5' arm      3' arm
1203	-	145501	90	25	-20.8	NP_051863		3' arm
1204	-	148441	89	21.5	-21.4	NP_051865		5' arm      3' arm
1192	-	11573	90	24	-24.79	NP_051869		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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