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GenBank Identifier | RefSeq Acc. | Name |
18450236 | NC_001132.2 | Myxoma virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
1172 | + | 150945 | 85 | 24 | -21 | NP_051870 | 5' arm 3' arm | ||
1173 | + | 151066 | 90 | 20 | -25.2 | NP_051870 | 5' arm 3' arm | ||
1174 | + | 153698 | 87 | 22 | -23.8 | NP_051872 | 5' arm 3' arm | ||
1175 | + | 156536 | 86 | 20.5 | -20.1 | NP_051718 | 5' arm 3' arm | ||
1176 | + | 156679 | 89 | 20 | -19.6 | NP_051874 | 5' arm 3' arm | ||
1177 | + | 157144 | 86 | 22.5 | -24.1 | NP_051716 | 5' arm 3' arm | ||
1178 | + | 158529 | 90 | 21 | -23.7 | NP_051714 | 5' arm 3' arm | ||
1179 | + | 158719 | 90 | 19.5 | -24.5 | NP_051878 | 5' arm 3' arm | ||
1180 | + | 159232 | 83 | 21.5 | -24.9 | NP_051879 | 5' arm 3' arm | ||
1181 | + | 159519 | 90 | 25.5 | -23.8 | NP_051713 | 5' arm 3' arm | ||
1182 | - | 2255 | 90 | 25.5 | -23.8 | NP_051879 | 5' arm 3' arm | ||
1183 | - | 2542 | 83 | 21.5 | -24.9 | NP_051713 | 5' arm 3' arm | ||
1184 | - | 3055 | 90 | 19.5 | -24.5 | NP_051714 | 5' arm 3' arm | ||
1185 | - | 3245 | 90 | 21 | -23.7 | NP_051714 | 5' arm 3' arm | ||
1186 | - | 4630 | 86 | 22.5 | -24.1 | NP_051716 | 5' arm 3' arm | ||
1187 | - | 5095 | 89 | 20 | -19.6 | NP_051874 | 5' arm 3' arm | ||
1188 | - | 5238 | 86 | 20.5 | -20.1 | NP_051718 | 5' arm 3' arm | ||
1189 | - | 8076 | 87 | 22 | -23.8 | NP_051872 | 5' arm 3' arm | ||
1190 | - | 10708 | 90 | 20 | -25.2 | NP_051722 | 5' arm 3' arm | ||
1191 | - | 10829 | 85 | 24 | -21 | NP_051870 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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