miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1166	+	134626	90	22.5	-24.19	NP_051852		5' arm      3' arm
1177	+	157144	86	22.5	-24.1	NP_051716		5' arm      3' arm
1186	-	4630	86	22.5	-24.1	NP_051716		5' arm      3' arm
1170	+	142342	89	22	-24.1	NP_051861		5' arm      3' arm
1194	-	89894	90	20	-24	NP_051805		5' arm      3' arm
1211	-	159609	90	20	-23.9	NP_051879		5' arm      3' arm
1153	+	2165	90	20	-23.9	NP_051879		5' arm      3' arm
1189	-	8076	87	22	-23.8	NP_051872		5' arm      3' arm
1182	-	2255	90	25.5	-23.8	NP_051879		5' arm      3' arm
1181	+	159519	90	25.5	-23.8	NP_051713		5' arm      3' arm
1174	+	153698	87	22	-23.8	NP_051872		5' arm      3' arm
1185	-	3245	90	21	-23.7	NP_051714		5' arm      3' arm
1178	+	158529	90	21	-23.7	NP_051714		5' arm      3' arm
1199	-	127948	87	20	-23.6	NP_051848		5' arm
1212	-	161178	87	22.5	-23.5			5' arm      3' arm
1152	+	596	87	22.5	-23.5			5' arm      3' arm
1202	-	135416	90	22.5	-23.2			5' arm      3' arm
1197	-	119760	90	20.5	-23	NP_051840		5' arm      3' arm
1168	+	136461	87	20.5	-23	NP_051854		5' arm      3' arm
1193	-	12991	90	20	-22.2	NP_051723		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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