miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1160	+	27102	88	19.5	-22	NP_051742		5' arm      3' arm
1169	+	139762	89	23	-21.5	NP_051858		5' arm      3' arm
1204	-	148441	89	21.5	-21.4	NP_051865		5' arm      3' arm
1157	+	6955	87	20.5	-21.2	NP_051719		5' arm      3' arm
1207	-	154819	87	20.5	-21.2	NP_051873		5' arm      3' arm
1191	-	10829	85	24	-21	NP_051870		5' arm      3' arm
1172	+	150945	85	24	-21	NP_051870		5' arm      3' arm
1196	-	112242	89	21.5	-20.91	NP_051828		5' arm      3' arm
1203	-	145501	90	25	-20.8	NP_051863		3' arm
1195	-	104559	89	22.5	-20.6			5' arm      3' arm
1162	+	44789	88	22.5	-20.6	NP_051758		5' arm      3' arm
1175	+	156536	86	20.5	-20.1	NP_051718		5' arm      3' arm
1188	-	5238	86	20.5	-20.1	NP_051718		5' arm      3' arm
1161	+	42384	82	20	-20	NP_051756		5' arm      3' arm
1165	+	127575	87	20.5	-19.8	NP_051848		5' arm      3' arm
1164	+	82031	89	24.5	-19.71	NP_051797		5' arm      3' arm
1187	-	5095	89	20	-19.6	NP_051874		5' arm      3' arm
1176	+	156679	89	20	-19.6	NP_051874		5' arm      3' arm
1200	-	134248	89	20.5	-19.6	NP_051852		3' arm
1208	-	156791	89	20	-19.4	NP_051874		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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