miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1179	+	158719	90	19.5	-24.5	NP_051878		5' arm      3' arm
1160	+	27102	88	19.5	-22	NP_051742		5' arm      3' arm
1184	-	3055	90	19.5	-24.5	NP_051714		5' arm      3' arm
1163	+	45928	90	20	-29.9	NP_051758		5' arm      3' arm
1173	+	151066	90	20	-25.2	NP_051870		5' arm      3' arm
1190	-	10708	90	20	-25.2	NP_051722		5' arm      3' arm
1211	-	159609	90	20	-23.9	NP_051879		5' arm      3' arm
1176	+	156679	89	20	-19.6	NP_051874		5' arm      3' arm
1208	-	156791	89	20	-19.4	NP_051874		5' arm      3' arm
1209	-	157720	87	20	-24.2	NP_051876		5' arm      3' arm
1161	+	42384	82	20	-20	NP_051756		5' arm      3' arm
1199	-	127948	87	20	-23.6	NP_051848		5' arm
1194	-	89894	90	20	-24	NP_051805		5' arm      3' arm
1153	+	2165	90	20	-23.9	NP_051879		5' arm      3' arm
1155	+	4054	87	20	-24.2	NP_051876		5' arm      3' arm
1156	+	4983	89	20	-19.4	NP_051718		5' arm      3' arm
1187	-	5095	89	20	-19.6	NP_051874		5' arm      3' arm
1193	-	12991	90	20	-22.2	NP_051723		5' arm      3' arm
1157	+	6955	87	20.5	-21.2	NP_051719		5' arm      3' arm
1168	+	136461	87	20.5	-23	NP_051854		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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