miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629378 NC_001806.1 Human herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5987 - 136085 90 20.5 -19.5 NP_044665 5' arm      3' arm
6003 - 151519 88 24.5 -21.5 5' arm      3' arm
6002 - 148266 87 21.5 -26 NP_044676 5' arm      3' arm
5993 - 139257 89 20 -24.2 NP_044668 5' arm      3' arm
5995 - 141467 90 19 -26.6 NP_044670 5' arm      3' arm
6001 - 147413 90 20 -26.3 NP_044662 5' arm      3' arm
5998 - 144512 89 19.5 -20.6 NP_044673 5' arm      3' arm
5996 - 142159 90 20.5 -26.9 NP_044670 5' arm      3' arm
5985 - 135666 86 21 -20.4 NP_044665 5' arm      3' arm
5986 - 135825 86 19.5 -21.6 NP_044665 5' arm      3' arm
5782 - 2477 89 20.5 -28.8 5' arm      3' arm
5999 - 145607 88 20.5 -20.7 NP_044675 5' arm      3' arm
6000 - 146276 88 21 -30.6 5' arm      3' arm
5989 - 137131 88 22 -22.9 NP_044666 5' arm      3' arm
5990 - 137708 87 21.5 -21.6 5' arm      3' arm
5997 - 144037 89 20 -25.7 5' arm      3' arm
5988 - 136996 87 20 -22.3 NP_044666 5' arm      3' arm
5984 - 135086 88 19.5 -20.6 5' arm      3' arm
5994 - 140211 89 21 -24.7 NP_044669 5' arm      3' arm
5992 - 138258 89 23 -20.2 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.