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GenBank Identifier | RefSeq Acc. | Name |
9629378 | NC_001806.1 | Human herpesvirus 1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
5987 | - | 136085 | 90 | 20.5 | -19.5 | NP_044665 | 5' arm 3' arm | ||
6003 | - | 151519 | 88 | 24.5 | -21.5 | 5' arm 3' arm | |||
6002 | - | 148266 | 87 | 21.5 | -26 | NP_044676 | 5' arm 3' arm | ||
5993 | - | 139257 | 89 | 20 | -24.2 | NP_044668 | 5' arm 3' arm | ||
5995 | - | 141467 | 90 | 19 | -26.6 | NP_044670 | 5' arm 3' arm | ||
6001 | - | 147413 | 90 | 20 | -26.3 | NP_044662 | 5' arm 3' arm | ||
5998 | - | 144512 | 89 | 19.5 | -20.6 | NP_044673 | 5' arm 3' arm | ||
5996 | - | 142159 | 90 | 20.5 | -26.9 | NP_044670 | 5' arm 3' arm | ||
5985 | - | 135666 | 86 | 21 | -20.4 | NP_044665 | 5' arm 3' arm | ||
5986 | - | 135825 | 86 | 19.5 | -21.6 | NP_044665 | 5' arm 3' arm | ||
5782 | - | 2477 | 89 | 20.5 | -28.8 | 5' arm 3' arm | |||
5999 | - | 145607 | 88 | 20.5 | -20.7 | NP_044675 | 5' arm 3' arm | ||
6000 | - | 146276 | 88 | 21 | -30.6 | 5' arm 3' arm | |||
5989 | - | 137131 | 88 | 22 | -22.9 | NP_044666 | 5' arm 3' arm | ||
5990 | - | 137708 | 87 | 21.5 | -21.6 | 5' arm 3' arm | |||
5997 | - | 144037 | 89 | 20 | -25.7 | 5' arm 3' arm | |||
5988 | - | 136996 | 87 | 20 | -22.3 | NP_044666 | 5' arm 3' arm | ||
5984 | - | 135086 | 88 | 19.5 | -20.6 | 5' arm 3' arm | |||
5994 | - | 140211 | 89 | 21 | -24.7 | NP_044669 | 5' arm 3' arm | ||
5992 | - | 138258 | 89 | 23 | -20.2 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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