miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629267 NC_001798.1 Human herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5502 - 141247 87 19.5 -24.7 NP_044536 5' arm      3' arm
5501 - 140740 90 19 -24.7 5' arm      3' arm
5500 - 140412 90 21 -27.1 NP_044535 5' arm      3' arm
5499 - 139134 90 21.5 -27.4 NP_044534 5' arm      3' arm
5498 - 139036 90 20 -20.6 NP_044534 5' arm      3' arm
5497 - 138447 90 19.5 -22.7 NP_044534 5' arm      3' arm
5496 - 137065 87 21 -24.6 NP_044533 5' arm      3' arm
5495 - 136447 87 21 -25.7 NP_044533 5' arm      3' arm
5494 - 135955 89 23 -24.7 NP_044532 5' arm      3' arm
5493 - 135738 84 19 -22.14 NP_044532 5' arm      3' arm
5492 - 135619 90 21.5 -22 NP_044532 5' arm      3' arm
5491 - 134435 88 20.5 -22.4 NP_044531 5' arm      3' arm
5490 - 133807 90 21.5 -21.3 NP_044531 5' arm      3' arm
5489 - 132879 82 26 -26.9 5' arm      3' arm
5488 - 132741 82 26 -28.8 5' arm      3' arm
5487 - 132370 87 20 -27.9 5' arm      3' arm
5486 - 126938 90 25.5 -28.3 5' arm      3' arm
5485 - 124076 87 19.5 -21.4 NP_044528 5' arm      3' arm
5484 - 123680 89 23.5 -31.3 5' arm      3' arm
5483 - 121500 88 23 -21 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.