miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629267 NC_001798.1 Human herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5462 - 106974 87 22 -29.6 NP_044519 5' arm      3' arm
5461 - 105575 89 21 -20 NP_044518 5' arm      3' arm
5460 - 105293 89 23 -20.3 NP_044518 5' arm      3' arm
5459 - 105169 85 20 -23 NP_044518 5' arm      3' arm
5458 - 105069 90 19.5 -23.6 NP_044518 5' arm      3' arm
5457 - 104768 90 22 -25.8 NP_044518 5' arm      3' arm
5456 - 104622 86 20 -25.6 NP_044518 5' arm      3' arm
5455 - 103153 90 22 -26.2 NP_044517 5' arm      3' arm
5454 - 102926 89 21.5 -24.7 NP_044517 5' arm      3' arm
5453 - 101316 88 19 -26.2 NP_044516 5' arm      3' arm
5452 - 100902 90 24 -21.4 NP_044516 5' arm      3' arm
5451 - 100766 88 19 -24.8 NP_044516 5' arm      3' arm
5450 - 100461 88 19.5 -30.6 NP_044516 5' arm      3' arm
5449 - 99809 89 21 -21.3 NP_044516 5' arm      3' arm
5448 - 98229 88 23.5 -22 NP_044514 5' arm      3' arm
5447 - 98011 88 21.5 -24.7 NP_044514 5' arm      3' arm
5446 - 97534 90 20.5 -27.1 NP_044514 5' arm      3' arm
5445 - 97420 90 19.5 -26.4 NP_044514 5' arm      3' arm
5444 - 97244 90 23.5 -24 NP_044514 5' arm      3' arm
5443 - 96189 89 22 -26.5 NP_044513 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.