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| GenBank Identifier | RefSeq Acc. | Name |
| 56694721 | NC_006560.1 | Cercopithecine herpesvirus 2 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 31111 | + | 127496 | 86 | 21 | -26.92 | YP_164516 | 5' arm 3' arm | ||
| 31124 | + | 143697 | 87 | 24.5 | -25.8 | YP_164515 | 5' arm 3' arm | ||
| 31123 | + | 143215 | 89 | 21.5 | -29.9 | YP_164513 | 5' arm 3' arm | ||
| 31121 | + | 142656 | 87 | 19 | -21.8 | YP_164513 | 5' arm 3' arm | ||
| 31122 | + | 142819 | 90 | 23 | -29.2 | YP_164513 | 5' arm 3' arm | ||
| 31266 | - | 141979 | 88 | 20.5 | -25.1 | YP_164512 | 5' arm 3' arm | ||
| 31120 | + | 140235 | 88 | 19.5 | -20.6 | YP_164510 | 5' arm 3' arm | ||
| 31118 | + | 138482 | 87 | 22.5 | -26.2 | YP_164509 | 5' arm 3' arm | ||
| 31119 | + | 139220 | 89 | 20.5 | -25.6 | YP_164509 | 5' arm 3' arm | ||
| 31265 | - | 139284 | 90 | 19.5 | -22.3 | YP_164509 | 5' arm 3' arm | ||
| 31264 | - | 137210 | 87 | 23 | -23.6 | YP_164508 | 5' arm 3' arm | ||
| 31261 | - | 134873 | 87 | 22 | -35.5 | YP_164506 | 5' arm 3' arm | ||
| 31116 | + | 134449 | 90 | 21.5 | -32 | YP_164506 | 5' arm 3' arm | ||
| 31115 | + | 134121 | 87 | 19 | -26.8 | YP_164505 | 5' arm 3' arm | ||
| 31114 | + | 133797 | 89 | 20 | -27.2 | YP_164505 | 5' arm 3' arm | ||
| 31259 | - | 130455 | 89 | 21.5 | -25.7 | YP_164503 | 5' arm 3' arm | ||
| 31112 | + | 130775 | 90 | 23.5 | -21.4 | YP_164503 | 5' arm 3' arm | ||
| 31267 | - | 146513 | 86 | 21 | -26.92 | YP_164502 | 5' arm 3' arm | ||
| 31130 | - | 2594 | 90 | 23 | -29.1 | YP_164501 | 5' arm 3' arm | ||
| 31102 | + | 112726 | 88 | 21.5 | -23.3 | YP_164499 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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