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| GenBank Identifier | RefSeq Acc. | Name |
| 56694721 | NC_006560.1 | Cercopithecine herpesvirus 2 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 31059 | + | 68187 | 86 | 21 | -19.4 | YP_164476 | 5' arm 3' arm | ||
| 31175 | - | 46260 | 88 | 21 | -19.5 | YP_164465 | 5' arm 3' arm | ||
| 30998 | + | 10727 | 88 | 19 | -19.5 | YP_164444 | 5' arm 3' arm | ||
| 31214 | - | 86254 | 89 | 19 | -19.5 | YP_164482 | 5' arm 3' arm | ||
| 31005 | + | 23548 | 90 | 20 | -19.5 | YP_164452 | 5' arm 3' arm | ||
| 31185 | - | 58527 | 88 | 19 | -19.6 | YP_164472 | 5' arm 3' arm | ||
| 31091 | + | 102837 | 89 | 21.5 | -19.7 | 5' arm 3' arm | |||
| 31201 | - | 69873 | 87 | 21 | -19.8 | 5' arm 3' arm | |||
| 31173 | - | 44383 | 89 | 20 | -19.8 | YP_164464 | 5' arm 3' arm | ||
| 31165 | - | 38905 | 90 | 19 | -19.9 | YP_164461 | 5' arm 3' arm | ||
| 31198 | - | 68201 | 90 | 20 | -19.94 | YP_164476 | 5' arm 3' arm | ||
| 31076 | + | 86094 | 90 | 22.5 | -20 | YP_164482 | 5' arm 3' arm | ||
| 31139 | - | 12261 | 86 | 20.5 | -20.1 | YP_164446 | 5' arm 3' arm | ||
| 31085 | + | 90669 | 86 | 20.5 | -20.1 | YP_164484 | 5' arm 3' arm | ||
| 31049 | + | 60416 | 88 | 20 | -20.1 | YP_164472 | 5' arm 3' arm | ||
| 31035 | + | 52164 | 89 | 20.5 | -20.2 | YP_164470 | 5' arm 3' arm | ||
| 31004 | + | 22533 | 87 | 20 | -20.4 | YP_164451 | 5' arm 3' arm | ||
| 31229 | - | 92104 | 88 | 20.5 | -20.4 | YP_164485 | 5' arm 3' arm | ||
| 31199 | - | 68779 | 89 | 24 | -20.4 | YP_164477 | 5' arm 3' arm | ||
| 31226 | - | 88882 | 88 | 20.5 | -20.4 | YP_164483 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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