miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629818 NC_001847.1 Bovine herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6622 - 84421 86 28 -23.9 NP_045348 5' arm      3' arm
6572 - 49553 90 27.5 -27.7 NP_045329 5' arm      3' arm
6529 - 12277 90 27 -26.7 NP_045312 5' arm      3' arm
6576 - 51123 90 26.5 -24.4 NP_045329 5' arm      3' arm
6602 - 68802 89 26 -28.4 NP_045338 5' arm      3' arm
6654 - 99772 90 26 -25.9 5' arm      3' arm
6487 + 110930 86 25.5 -21.9 5' arm      3' arm
6686 - 127288 86 25.5 -21.9 5' arm      3' arm
6398 + 45070 89 25.5 -29 NP_045327 5' arm      3' arm
6508 + 126988 86 25 -31.8 5' arm      3' arm
6594 - 62388 88 25 -29.8 NP_045334 5' arm      3' arm
6437 + 69142 90 25 -24.2 NP_045339 5' arm      3' arm
6664 - 111230 86 25 -31.8 5' arm      3' arm
6499 + 121246 90 24.5 -28.5 NP_045371 5' arm      3' arm
6501 + 121532 81 24.5 -30 5' arm      3' arm
6491 + 115891 85 24.5 -36.8 NP_045368 5' arm      3' arm
6484 + 108084 83 24.5 -31.2 5' arm      3' arm
6417 + 55419 90 24.5 -25.8 NP_045330 5' arm      3' arm
6682 - 121455 89 24.5 -24.6 NP_045371 5' arm      3' arm
6635 - 91944 89 24.5 -26.4 NP_045353 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.