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GenBank Identifier | RefSeq Acc. | Name |
9629818 | NC_001847.1 | Bovine herpesvirus 1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
6622 | - | 84421 | 86 | 28 | -23.9 | NP_045348 | 5' arm 3' arm | ||
6572 | - | 49553 | 90 | 27.5 | -27.7 | NP_045329 | 5' arm 3' arm | ||
6529 | - | 12277 | 90 | 27 | -26.7 | NP_045312 | 5' arm 3' arm | ||
6576 | - | 51123 | 90 | 26.5 | -24.4 | NP_045329 | 5' arm 3' arm | ||
6602 | - | 68802 | 89 | 26 | -28.4 | NP_045338 | 5' arm 3' arm | ||
6654 | - | 99772 | 90 | 26 | -25.9 | 5' arm 3' arm | |||
6487 | + | 110930 | 86 | 25.5 | -21.9 | 5' arm 3' arm | |||
6686 | - | 127288 | 86 | 25.5 | -21.9 | 5' arm 3' arm | |||
6398 | + | 45070 | 89 | 25.5 | -29 | NP_045327 | 5' arm 3' arm | ||
6508 | + | 126988 | 86 | 25 | -31.8 | 5' arm 3' arm | |||
6594 | - | 62388 | 88 | 25 | -29.8 | NP_045334 | 5' arm 3' arm | ||
6437 | + | 69142 | 90 | 25 | -24.2 | NP_045339 | 5' arm 3' arm | ||
6664 | - | 111230 | 86 | 25 | -31.8 | 5' arm 3' arm | |||
6499 | + | 121246 | 90 | 24.5 | -28.5 | NP_045371 | 5' arm 3' arm | ||
6501 | + | 121532 | 81 | 24.5 | -30 | 5' arm 3' arm | |||
6491 | + | 115891 | 85 | 24.5 | -36.8 | NP_045368 | 5' arm 3' arm | ||
6484 | + | 108084 | 83 | 24.5 | -31.2 | 5' arm 3' arm | |||
6417 | + | 55419 | 90 | 24.5 | -25.8 | NP_045330 | 5' arm 3' arm | ||
6682 | - | 121455 | 89 | 24.5 | -24.6 | NP_045371 | 5' arm 3' arm | ||
6635 | - | 91944 | 89 | 24.5 | -26.4 | NP_045353 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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