miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629818 NC_001847.1 Bovine herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6491 + 115891 85 24.5 -36.8 NP_045368 5' arm      3' arm
6393 + 41617 84 24 -28.5 NP_045324 5' arm      3' arm
6356 + 10739 84 24 -23.3 NP_045311 5' arm      3' arm
6504 + 125783 90 24 -20.6 5' arm      3' arm
6363 + 17408 90 24 -26 NP_045314 5' arm      3' arm
6668 - 112435 90 24 -20.6 5' arm      3' arm
6571 - 47801 90 24 -31.2 NP_045328 5' arm      3' arm
6479 + 99556 90 24 -22.5 5' arm      3' arm
6520 - 3294 90 23.5 -21 NP_045305 5' arm      3' arm
6556 - 27185 89 23.5 -23.8 NP_045320 5' arm      3' arm
6423 + 58098 90 23.5 -30.3 NP_045331 5' arm      3' arm
6448 + 80764 90 23.5 -30.5 NP_045345 5' arm      3' arm
6477 + 98629 89 23.5 -22.2 NP_045358 5' arm      3' arm
6409 + 50047 90 23.5 -24.5 NP_045329 5' arm      3' arm
6374 + 25439 89 23.5 -21.1 NP_045319 5' arm      3' arm
6488 + 111088 89 23.5 -20.12 5' arm      3' arm
6685 - 127130 89 23.5 -20.12 5' arm      3' arm
6468 + 93452 87 23.5 -21.9 NP_045353 5' arm      3' arm
6457 + 86159 88 23 -23.2 NP_045350 5' arm      3' arm
6463 + 90135 89 23 -22.3 NP_045351 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.