miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629818 NC_001847.1 Bovine herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6672 - 116033 90 20 -20 NP_045368 5' arm      3' arm
6674 - 116584 88 20 -21.6 NP_045368 5' arm      3' arm
6669 - 115135 87 19.5 -29 NP_045367 5' arm      3' arm
6490 + 115332 90 19 -23.5 NP_045367 5' arm      3' arm
6670 - 115245 86 21 -33.9 NP_045367 5' arm      3' arm
6489 + 114846 86 21 -21.6 NP_045366 5' arm      3' arm
6513 + 131834 90 22.5 -21.8 NP_045364 5' arm      3' arm
6659 - 106384 90 22.5 -21.8 NP_045364 5' arm      3' arm
6656 - 102544 89 19.5 -29.1 NP_045363 5' arm      3' arm
6655 - 101845 85 22.5 -30.4 NP_045363 5' arm      3' arm
6480 + 101167 87 20 -26.9 NP_045363 5' arm      3' arm
6657 - 102724 89 21 -20.9 NP_045363 5' arm      3' arm
6478 + 99304 90 19.5 -22.3 NP_045360 5' arm      3' arm
6652 - 99175 89 21.5 -22.8 NP_045359 5' arm      3' arm
6477 + 98629 89 23.5 -22.2 NP_045358 5' arm      3' arm
6475 + 98279 89 22.5 -24.7 NP_045358 5' arm      3' arm
6651 - 98655 90 22 -23.3 NP_045358 5' arm      3' arm
6476 + 98481 90 22 -19.9 NP_045358 5' arm      3' arm
6473 + 97287 90 20 -19.8 NP_045357 5' arm      3' arm
6474 + 97421 90 21.5 -22.6 NP_045357 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.