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| GenBank Identifier | RefSeq Acc. | Name |
| 30984428 | NC_004812.1 | Cercopithecine herpesvirus 1 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 21711 | - | 132941 | 89 | 27 | -23.6 | 5' arm 3' arm | |||
| 21482 | + | 86018 | 89 | 27 | -23.1 | 5' arm 3' arm | |||
| 21554 | + | 149483 | 89 | 27 | -23.6 | 5' arm 3' arm | |||
| 21516 | + | 107437 | 81 | 26.5 | -26.3 | NP_851912 | 5' arm 3' arm | ||
| 21713 | - | 134252 | 88 | 26.5 | -27.2 | NP_851920 | 5' arm 3' arm | ||
| 21468 | + | 78904 | 90 | 26 | -26.2 | NP_851896 | 5' arm 3' arm | ||
| 21615 | - | 44353 | 89 | 26 | -29.3 | NP_851881 | 5' arm 3' arm | ||
| 21444 | + | 61748 | 89 | 26 | -23.6 | 5' arm 3' arm | |||
| 21526 | + | 112139 | 87 | 26 | -20 | NP_851914 | 5' arm 3' arm | ||
| 21559 | - | 7283 | 90 | 25.5 | -34.2 | 5' arm 3' arm | |||
| 21533 | + | 118575 | 90 | 25.5 | -34.2 | 5' arm 3' arm | |||
| 21395 | + | 26437 | 83 | 25.5 | -28.2 | NP_851871 | 5' arm 3' arm | ||
| 21611 | - | 42561 | 90 | 25.5 | -23.1 | NP_851880 | 5' arm 3' arm | ||
| 21493 | + | 91444 | 90 | 25 | -22.9 | NP_851901 | 5' arm 3' arm | ||
| 21556 | + | 155625 | 86 | 25 | -31.1 | 5' arm 3' arm | |||
| 21709 | - | 126799 | 86 | 25 | -31.1 | 5' arm 3' arm | |||
| 21466 | + | 75900 | 89 | 25 | -27.2 | NP_851896 | 5' arm 3' arm | ||
| 21664 | - | 85704 | 89 | 24.5 | -20.2 | NP_851898 | 5' arm 3' arm | ||
| 21651 | - | 69416 | 89 | 24.5 | -27.8 | NP_851894 | 5' arm 3' arm | ||
| 21414 | + | 47250 | 88 | 24.5 | -22.5 | NP_851883 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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