miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
2715	+	136880	86	20.5	-25.3	YP_053120		5' arm      3' arm
2815	-	137203	87	19	-25.2	YP_053120		5' arm      3' arm
2716	+	137307	90	21	-22.1	YP_053120		5' arm      3' arm
2814	-	136364	90	19	-27.1	YP_053119		5' arm      3' arm
2714	+	135643	90	21.5	-19.5	YP_053118		5' arm      3' arm
2812	-	129818	89	33	-30.8	YP_053115		5' arm      3' arm
2713	+	131221	87	20.5	-26.1	YP_053115		5' arm      3' arm
2813	-	129913	90	20	-22.6	YP_053115		5' arm      3' arm
2811	-	128358	90	25	-31	YP_053114		5' arm      3' arm
2712	+	124741	90	22	-21.9	YP_053111		5' arm      3' arm
2717	+	138226	90	20	-28.3	YP_053111		5' arm      3' arm
2810	-	124934	90	20	-28.3	YP_053111		5' arm      3' arm
2807	-	121809	90	22.5	-26.4	YP_053109		5' arm      3' arm
2720	+	141351	90	22.5	-26.4	YP_053109		5' arm      3' arm
2704	+	117899	89	22.5	-27.5	YP_053108		5' arm      3' arm
2700	+	114984	88	21	-32.5	YP_053108		5' arm      3' arm
2726	+	145173	89	27.5	-30.6	YP_053108		5' arm      3' arm
2824	-	146298	89	20	-19.6	YP_053108		5' arm      3' arm
2823	-	145179	89	22	-33.8	YP_053108		5' arm      3' arm
2701	+	115143	90	21.5	-30.9	YP_053108		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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