miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
2708	+	120583	90	19	-24.7			5' arm      3' arm
2665	+	65630	90	19	-29.3	YP_053081		5' arm      3' arm
2658	+	60139	90	19	-20.9	YP_053077		5' arm      3' arm
2690	+	100125	90	19.5	-21.9	YP_053100		5' arm      3' arm
2783	-	87391	90	19.5	-21.4	YP_053092		5' arm      3' arm
2797	-	113400	89	19.5	-21.5			5' arm      3' arm
2793	-	107098	90	19.5	-23.3	YP_053104		5' arm      3' arm
2651	+	49535	77	19.5	-26.4	YP_053073		5' arm      3' arm
2779	-	75494	89	19.5	-19.7	YP_053086		5' arm      3' arm
2754	-	35359	84	19.5	-21.2	YP_053068		5' arm      3' arm
2787	-	89904	90	19.5	-19.8	YP_053094		5' arm      3' arm
2776	-	68394	90	19.5	-21.6	YP_053082		5' arm      3' arm
2631	+	5675	89	19.5	-20.5	YP_053050		5' arm      3' arm
2738	-	14186	90	19.5	-23	YP_053057		5' arm      3' arm
2678	+	84682	87	19.5	-20.9	YP_053091		5' arm      3' arm
2673	+	79725	86	19.5	-25.4	YP_053088		5' arm      3' arm
2730	+	149760	89	19.5	-21.5			5' arm      3' arm
2680	+	86945	80	19.5	-22.5	YP_053092		5' arm      3' arm
2743	-	18882	88	19.5	-24.3	YP_053059		5' arm      3' arm
2635	+	8392	86	19.5	-20.6	YP_053052		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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