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GenBank Identifier | RefSeq Acc. | Name |
9625875 | NC_001348.1 | Human herpesvirus 3 (strain Dumas) |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
2056 | + | 2032 | 89 | 19.5 | -20 | NP_040126 | 5' arm 3' arm | ||
2057 | + | 2288 | 90 | 20 | -19.8 | NP_040126 | 5' arm 3' arm | ||
2058 | + | 23909 | 88 | 24.5 | -27.4 | 5' arm 3' arm | |||
2059 | + | 42454 | 89 | 22.5 | -22.9 | NP_040146 | 5' arm 3' arm | ||
2060 | + | 51747 | 81 | 19.5 | -25.6 | NP_040152 | 5' arm 3' arm | ||
2061 | + | 59052 | 87 | 22.5 | -22.1 | NP_040154 | 5' arm 3' arm | ||
2062 | + | 66753 | 90 | 19.5 | -24.5 | NP_040160 | 5' arm 3' arm | ||
2063 | + | 91776 | 86 | 24 | -23.7 | NP_040174 | 5' arm 3' arm | ||
2064 | + | 92143 | 88 | 21 | -26.6 | NP_040174 | 5' arm 3' arm | ||
2065 | + | 100267 | 89 | 21.5 | -28.1 | NP_040181 | 5' arm 3' arm | ||
2066 | + | 103165 | 90 | 21.5 | -21 | NP_040183 | 5' arm 3' arm | ||
2067 | + | 103804 | 90 | 21 | -19.9 | NP_040183 | 5' arm 3' arm | ||
2068 | + | 106145 | 89 | 20 | -25.7 | NP_040184 | 5' arm 3' arm | ||
2069 | + | 106483 | 88 | 22 | -31.7 | NP_040193 | 5' arm 3' arm | ||
2070 | + | 106891 | 90 | 19 | -22.5 | NP_040184 | 5' arm 3' arm | ||
2071 | + | 107439 | 89 | 23 | -25 | NP_040184 | 5' arm 3' arm | ||
2072 | + | 107760 | 84 | 19.5 | -25.5 | NP_040184 | 5' arm 3' arm | ||
2073 | + | 108176 | 86 | 22 | -26.1 | NP_040193 | 5' arm 3' arm | ||
2074 | + | 108622 | 87 | 19 | -25.71 | NP_040193 | 5' arm 3' arm | ||
2075 | + | 108755 | 86 | 20.5 | -20.3 | NP_040193 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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