miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9625875 NC_001348.1 Human herpesvirus 3 (strain Dumas)

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2056 + 2032 89 19.5 -20 NP_040126 5' arm      3' arm
2057 + 2288 90 20 -19.8 NP_040126 5' arm      3' arm
2058 + 23909 88 24.5 -27.4 5' arm      3' arm
2059 + 42454 89 22.5 -22.9 NP_040146 5' arm      3' arm
2060 + 51747 81 19.5 -25.6 NP_040152 5' arm      3' arm
2061 + 59052 87 22.5 -22.1 NP_040154 5' arm      3' arm
2062 + 66753 90 19.5 -24.5 NP_040160 5' arm      3' arm
2063 + 91776 86 24 -23.7 NP_040174 5' arm      3' arm
2064 + 92143 88 21 -26.6 NP_040174 5' arm      3' arm
2065 + 100267 89 21.5 -28.1 NP_040181 5' arm      3' arm
2066 + 103165 90 21.5 -21 NP_040183 5' arm      3' arm
2067 + 103804 90 21 -19.9 NP_040183 5' arm      3' arm
2068 + 106145 89 20 -25.7 NP_040184 5' arm      3' arm
2069 + 106483 88 22 -31.7 NP_040193 5' arm      3' arm
2070 + 106891 90 19 -22.5 NP_040184 5' arm      3' arm
2071 + 107439 89 23 -25 NP_040184 5' arm      3' arm
2072 + 107760 84 19.5 -25.5 NP_040184 5' arm      3' arm
2073 + 108176 86 22 -26.1 NP_040193 5' arm      3' arm
2074 + 108622 87 19 -25.71 NP_040193 5' arm      3' arm
2075 + 108755 86 20.5 -20.3 NP_040193 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.