miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
29561	-	50618	88	19	-20.7	YP_068344		5' arm      3' arm
29503	+	116476	88	19	-29.1	YP_068392		5' arm      3' arm
29532	-	18239	88	19	-19.7	YP_068330		5' arm      3' arm
29598	-	82054	89	19	-21	YP_068366		5' arm      3' arm
29617	-	97103	89	19	-19.4	YP_068377		5' arm      3' arm
29574	-	63411	90	19	-23.3			5' arm      3' arm
29368	+	3243	85	19	-28.7	YP_068320		5' arm      3' arm
29548	-	34618	90	19	-21.4	YP_068339		5' arm      3' arm
29446	+	68893	90	19	-25.2	YP_068356		5' arm      3' arm
29437	+	57296	88	19	-20.4	YP_068350		5' arm      3' arm
29563	-	51001	86	19	-20.8	YP_068344		5' arm      3' arm
29626	-	108475	86	19	-31			5' arm      3' arm
29540	-	27142	90	19	-22.7	YP_068333		5' arm      3' arm
29555	-	48336	87	19	-24.4	YP_068342		5' arm      3' arm
29430	+	50440	88	19	-22.6	YP_068344		5' arm      3' arm
29573	-	63133	85	19	-26.2			5' arm      3' arm
29380	+	10086	88	19	-23	YP_068326		5' arm      3' arm
29383	+	12845	90	19	-21.8	YP_068328		5' arm      3' arm
29642	-	128126	88	19	-29.1	YP_068383		5' arm      3' arm
29427	+	45516	90	19	-26.9	YP_068341		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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