miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
29626	-	108475	86	19	-31			5' arm      3' arm
29610	-	94428	90	21	-31	YP_068375		5' arm      3' arm
29428	+	47095	89	20.5	-31	YP_068342		5' arm      3' arm
29616	-	96984	89	19.5	-30.8	YP_068377		5' arm      3' arm
29455	+	78747	88	22.5	-30.8	YP_068363		5' arm      3' arm
29570	-	59760	90	21.5	-30.7	YP_068352		5' arm      3' arm
29377	+	6783	90	24	-30.7	YP_068322		5' arm      3' arm
29409	+	29131	87	22.5	-30.5	YP_068334		5' arm      3' arm
29494	+	100360	89	21.5	-30.5			5' arm      3' arm
29401	+	25634	87	23	-30.4	YP_068333		5' arm      3' arm
29426	+	45398	90	24	-30.3	YP_068341		5' arm      3' arm
29564	-	51124	89	19.5	-30.2	YP_068344		5' arm      3' arm
29435	+	52812	88	22	-30.2	YP_068346		5' arm      3' arm
29420	+	41085	89	19	-30.1	YP_068339		5' arm      3' arm
29488	+	98371	90	26	-29.9			5' arm      3' arm
29556	-	48755	88	20	-29.8	YP_068342		5' arm      3' arm
29547	-	31291	85	20	-29.7			5' arm      3' arm
29379	+	7075	89	20.5	-29.7	YP_068322		5' arm      3' arm
29503	+	116476	88	19	-29.1	YP_068392		5' arm      3' arm
29642	-	128126	88	19	-29.1	YP_068383		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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