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| GenBank Identifier | RefSeq Acc. | Name |
| 51557483 | NC_006151.1 | Suid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29372 | + | 5243 | 90 | 21.5 | -20.7 | YP_068322 | 5' arm 3' arm | ||
| 29561 | - | 50618 | 88 | 19 | -20.7 | YP_068344 | 5' arm 3' arm | ||
| 29563 | - | 51001 | 86 | 19 | -20.8 | YP_068344 | 5' arm 3' arm | ||
| 29531 | - | 17603 | 90 | 19.5 | -20.9 | YP_068330 | 5' arm 3' arm | ||
| 29441 | + | 62941 | 86 | 19 | -20.9 | 5' arm 3' arm | |||
| 29433 | + | 51971 | 90 | 20 | -20.9 | YP_068345 | 5' arm 3' arm | ||
| 29458 | + | 80141 | 90 | 19 | -21 | YP_068364 | 5' arm 3' arm | ||
| 29598 | - | 82054 | 89 | 19 | -21 | YP_068366 | 5' arm 3' arm | ||
| 29524 | - | 4168 | 88 | 21.5 | -21 | YP_068321 | 5' arm 3' arm | ||
| 29463 | + | 82828 | 90 | 22 | -21.2 | YP_068366 | 5' arm 3' arm | ||
| 29481 | + | 95656 | 90 | 24 | -21.2 | 5' arm 3' arm | |||
| 29415 | + | 34956 | 89 | 20.5 | -21.2 | YP_068339 | 5' arm 3' arm | ||
| 29522 | - | 325 | 89 | 19.5 | -21.2 | 5' arm 3' arm | |||
| 29560 | - | 49884 | 87 | 19 | -21.3 | YP_068343 | 5' arm 3' arm | ||
| 29385 | + | 17046 | 88 | 20 | -21.3 | YP_068330 | 5' arm 3' arm | ||
| 29548 | - | 34618 | 90 | 19 | -21.4 | YP_068339 | 5' arm 3' arm | ||
| 29569 | - | 57038 | 90 | 22.5 | -21.4 | YP_068348 | 5' arm 3' arm | ||
| 29500 | + | 114377 | 88 | 22.5 | -21.4 | 5' arm 3' arm | |||
| 29497 | + | 109098 | 83 | 21 | -21.4 | 5' arm 3' arm | |||
| 29645 | - | 130225 | 88 | 22.5 | -21.4 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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