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| GenBank Identifier | RefSeq Acc. | Name |
| 28373214 | NC_001347.2 | Human herpesvirus 5 (laboratory strain AD169) |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 1537 | + | 728 | 90 | 26.5 | -23.8 | 5' arm 3' arm | |||
| 1549 | + | 25091 | 89 | 23 | -25.3 | 5' arm 3' arm | |||
| 1629 | + | 93639 | 86 | 21 | -23.6 | 5' arm 3' arm | |||
| 1632 | + | 94903 | 89 | 21 | -28.9 | 5' arm 3' arm | |||
| 1552 | + | 27635 | 87 | 23 | -19.6 | hcmv-mir-UL22A | 5' arm 3' arm | ||
| 1631 | + | 94470 | 90 | 23.5 | -23.6 | 5' arm 3' arm | |||
| 1580 | + | 44534 | 85 | 20.5 | -25.2 | 5' arm 3' arm | |||
| 1565 | + | 37588 | 90 | 23 | -25.1 | 5' arm 3' arm | |||
| 1621 | + | 87421 | 86 | 26.5 | -33.7 | 5' arm 3' arm | |||
| 1618 | + | 87012 | 90 | 22 | -22.7 | 5' arm 3' arm | |||
| 1619 | + | 87142 | 90 | 19.5 | -19.6 | 5' arm 3' arm | |||
| 1589 | + | 49490 | 85 | 26.5 | -28.7 | ||||
| 1539 | + | 4532 | 90 | 25 | -28.7 | 5' arm 3' arm | |||
| 1538 | + | 832 | 78 | 19.5 | -20.5 | 5' arm 3' arm | |||
| 1542 | + | 8132 | 90 | 23 | -24.6 | 5' arm 3' arm | |||
| 1541 | + | 7587 | 86 | 20.5 | -24.5 | 5' arm 3' arm | |||
| 1540 | + | 7227 | 89 | 19 | -21.9 | 5' arm 3' arm | |||
| 1595 | + | 54745 | 89 | 21 | -24 | 5' arm 3' arm | |||
| 1628 | + | 93169 | 90 | 20.5 | -22.5 | 5' arm 3' arm | |||
| 1620 | + | 87300 | 90 | 24 | -34.1 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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