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| GenBank Identifier | RefSeq Acc. | Name |
| 52139181 | NC_006273.1 | Human herpesvirus 5 (wild type strain Merlin) |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29796 | + | 87787 | 86 | 26.5 | -36.2 | 5' arm 3' arm | |||
| 1865 | - | 57076 | 90 | 23.5 | -35.7 | NP_039978 | 5' arm 3' arm | ||
| 30056 | - | 57435 | 90 | 23.5 | -35.7 | YP_081502 | 5' arm 3' arm | ||
| 1651 | + | 104294 | 85 | 21 | -35.4 | NP_783789 | 5' arm 3' arm | ||
| 29826 | + | 104677 | 85 | 21 | -35.4 | YP_081519 | 5' arm 3' arm | ||
| 1923 | - | 93883 | 88 | 20.5 | -35.4 | 5' arm 3' arm | |||
| 30028 | - | 38281 | 90 | 22 | -35.3 | 5' arm 3' arm | |||
| 1837 | - | 37935 | 90 | 22 | -35.3 | 5' arm 3' arm | |||
| 30041 | - | 45348 | 89 | 23 | -35.2 | YP_081493 | 5' arm 3' arm | ||
| 1850 | - | 45000 | 89 | 23 | -35.2 | NP_783782 | 5' arm 3' arm | ||
| 29947 | + | 195666 | 88 | 22 | -34.6 | 5' arm 3' arm | |||
| 30254 | - | 235068 | 88 | 22 | -34.6 | 5' arm 3' arm | |||
| 1771 | + | 195878 | 89 | 22.5 | -34.4 | 5' arm 3' arm | |||
| 1715 | + | 141802 | 88 | 20 | -34.2 | NP_040032 | 5' arm 3' arm | ||
| 1620 | + | 87300 | 90 | 24 | -34.1 | 5' arm 3' arm | |||
| 1638 | + | 99212 | 85 | 26 | -34 | NP_040003 | 5' arm 3' arm | ||
| 1720 | + | 147237 | 89 | 20 | -33.7 | 5' arm 3' arm | |||
| 1621 | + | 87421 | 86 | 26.5 | -33.7 | 5' arm 3' arm | |||
| 29897 | + | 147615 | 89 | 20 | -33.7 | 5' arm 3' arm | |||
| 1555 | + | 32807 | 82 | 19 | -33.6 | NP_039961 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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