miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
29732	+	33156	82	19	-33.6	YP_081486		5' arm      3' arm
1721	+	148042	85	23	-33.5	NP_783791		5' arm      3' arm
29900	+	148420	85	23	-33.5	YP_081548		5' arm      3' arm
29937	+	188192	79	21.5	-33.4	YP_081579		5' arm      3' arm
29976	+	225357	80	20.5	-33.3			5' arm      3' arm
1796	+	220055	80	20.5	-33.3			5' arm      3' arm
1718	+	144553	89	20	-33.2	NP_040033		5' arm      3' arm
2053	-	228557	89	21.5	-33.1	NP_040085		5' arm      3' arm
1769	+	191550	89	21.5	-33.1	NP_040122		5' arm      3' arm
29894	+	144936	89	20	-33.1	YP_081545		5' arm      3' arm
2024	-	206920	90	23	-33	NP_040102		5' arm      3' arm
30226	-	212205	90	23	-33	YP_081602		5' arm      3' arm
1857	-	49578	90	28.5	-32.9		hcmv-mir-UL36
2026	-	208598	85	26.5	-32.9	NP_040104		5' arm      3' arm
1943	-	128436	86	21	-32.9	NP_040021		5' arm      3' arm
30228	-	213882	85	26.5	-32.9	YP_081604		5' arm      3' arm
30051	-	49928	90	28.5	-32.9		#hcmv-mir-UL36	5' arm
1825	-	30841	89	21.5	-32.8	NP_039959		5' arm      3' arm
30055	-	55751	90	22.5	-32.8	YP_081501		5' arm      3' arm
1568	+	38908	86	23.5	-32.8	NP_783780		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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