miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1658	+	112113	90	19	-20.7	NP_040011		5' arm      3' arm
1767	+	190727	89	19	-19.5	NP_040122		5' arm      3' arm
29759	+	48083	90	19	-28.7	YP_081494		5' arm      3' arm
29753	+	42478	90	19	-24.4	YP_081491		5' arm      3' arm
1540	+	7227	89	19	-21.9			5' arm      3' arm
29751	+	42067	86	19	-22.1	YP_081491		5' arm      3' arm
1625	+	89702	90	19	-20.3	NP_039991		5' arm      3' arm
29773	+	64296	90	19	-24.7	YP_081505		5' arm      3' arm
29768	+	55831	85	19	-21.2	YP_081501		5' arm      3' arm
29732	+	33156	82	19	-33.6	YP_081486		5' arm      3' arm
1547	+	21626	89	19	-21.2	NP_783773		5' arm      3' arm
1606	+	72313	86	19	-22.3	NP_039983		5' arm      3' arm
1706	+	137865	90	19	-22.6	NP_040029		5' arm      3' arm
1588	+	49320	90	19	-19.7	NP_039970		5' arm      3' arm
1623	+	88795	88	19	-22.7	NP_039991		5' arm      3' arm
1583	+	46376	90	19	-20.4	NP_039969		5' arm      3' arm
1704	+	136334	87	19	-21.4	NP_040028		5' arm      3' arm
29791	+	86948	88	19	-22.5	YP_081515		5' arm      3' arm
29717	+	115	90	19	-22.8			5' arm      3' arm
29731	+	32857	87	19	-19.9	YP_081485		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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