miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
28373214 NC_001347.2 Human herpesvirus 5 (laboratory strain AD169)

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
1557 + 33713 87 23 -19.4 NP_039961 5' arm      3' arm
1558 + 34069 88 20 -28.5 NP_039961 5' arm      3' arm
1559 + 34283 85 20.5 -26 NP_039961 5' arm      3' arm
1560 + 34569 88 20.5 -26.3 NP_039961 5' arm      3' arm
1561 + 35936 90 21.5 -22.9 NP_039963 5' arm      3' arm
1562 + 36283 88 19 -25 NP_039963 5' arm      3' arm
1563 + 36491 89 19.5 -21.6 NP_039963 5' arm      3' arm
1564 + 36839 89 20.5 -31.7 NP_039963 5' arm      3' arm
1565 + 37588 90 23 -25.1 5' arm      3' arm
1566 + 37950 85 25 -24.2 NP_783780 5' arm      3' arm
1567 + 38056 87 22.5 -31.4 NP_783780 5' arm      3' arm
1568 + 38908 86 23.5 -32.8 NP_783780 5' arm      3' arm
1569 + 39366 88 19.5 -20.7 NP_783780 5' arm      3' arm
1570 + 40521 89 20.5 -22.7 NP_039966 5' arm      3' arm
1571 + 40740 89 27 -26.8 NP_039966 5' arm      3' arm
1572 + 40913 87 21.5 -21.6 NP_039966 5' arm      3' arm
1573 + 41073 89 20 -29.1 NP_039966 5' arm      3' arm
1574 + 41239 90 22 -21.6 NP_039966 5' arm      3' arm
1575 + 41341 82 19.5 -26.1 NP_039966 5' arm      3' arm
1576 + 41694 89 20 -25.8 NP_039966 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.