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| GenBank Identifier | RefSeq Acc. | Name |
| 52139181 | NC_006273.1 | Human herpesvirus 5 (wild type strain Merlin) |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29847 | + | 119186 | 86 | 19.5 | -19.4 | YP_081530 | 5' arm 3' arm | ||
| 30245 | - | 227971 | 90 | 20.5 | -19.4 | YP_081614 | 5' arm 3' arm | ||
| 1686 | + | 125692 | 85 | 19.5 | -19.4 | NP_040021 | 5' arm 3' arm | ||
| 1961 | - | 147483 | 85 | 21 | -19.4 | 5' arm 3' arm | |||
| 2046 | - | 222669 | 90 | 20.5 | -19.4 | NP_040115 | 5' arm 3' arm | ||
| 29761 | + | 49671 | 90 | 20.5 | -19.4 | YP_081495 | 5' arm 3' arm | ||
| 1557 | + | 33713 | 87 | 23 | -19.4 | NP_039961 | 5' arm 3' arm | ||
| 29965 | + | 216543 | 89 | 19.5 | -19.4 | YP_081607 | 5' arm 3' arm | ||
| 30125 | - | 112612 | 88 | 19.5 | -19.4 | YP_081524 | 5' arm 3' arm | ||
| 29935 | + | 176404 | 90 | 21 | -19.4 | 5' arm 3' arm | |||
| 1887 | - | 67678 | 87 | 24.5 | -19.4 | NP_039982 | 5' arm 3' arm | ||
| 29779 | + | 72077 | 89 | 20 | -19.4 | YP_081508 | 5' arm 3' arm | ||
| 1785 | + | 211247 | 89 | 19.5 | -19.4 | NP_783806 | 5' arm 3' arm | ||
| 29828 | + | 105965 | 87 | 20 | -19.4 | YP_081520 | 5' arm 3' arm | ||
| 1674 | + | 118815 | 86 | 19.5 | -19.4 | NP_040017 | 5' arm 3' arm | ||
| 1890 | - | 69013 | 86 | 19.5 | -19.4 | NP_039982 | 5' arm 3' arm | ||
| 30151 | - | 147861 | 85 | 21 | -19.4 | 5' arm 3' arm | |||
| 30182 | - | 175116 | 88 | 21.5 | -19.5 | 5' arm 3' arm | |||
| 30191 | - | 187967 | 89 | 23.5 | -19.5 | YP_081578 | 5' arm 3' arm | ||
| 29970 | + | 218580 | 90 | 19 | -19.5 | YP_081608 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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