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| GenBank Identifier | RefSeq Acc. | Name |
| 52139181 | NC_006273.1 | Human herpesvirus 5 (wild type strain Merlin) |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 30252 | - | 234513 | 90 | 21 | -20.2 | YP_081619 | 5' arm 3' arm | ||
| 29984 | + | 232981 | 87 | 25 | -24.5 | YP_081619 | 5' arm 3' arm | ||
| 30250 | - | 232640 | 90 | 21.5 | -22.4 | YP_081619 | 5' arm 3' arm | ||
| 30206 | - | 196266 | 90 | 21 | -23.2 | YP_081619 | 5' arm 3' arm | ||
| 30251 | - | 234142 | 87 | 21 | -25.1 | YP_081619 | 5' arm 3' arm | ||
| 30248 | - | 230155 | 89 | 19.5 | -22.4 | YP_081616 | 5' arm 3' arm | ||
| 29981 | + | 229198 | 90 | 20 | -23.4 | YP_081615 | 5' arm 3' arm | ||
| 30247 | - | 229182 | 90 | 21 | -21.9 | YP_081615 | 5' arm 3' arm | ||
| 29982 | + | 229301 | 87 | 19.5 | -22.8 | YP_081615 | 5' arm 3' arm | ||
| 30246 | - | 228509 | 89 | 20.5 | -22.5 | YP_081614 | 5' arm 3' arm | ||
| 30245 | - | 227971 | 90 | 20.5 | -19.4 | YP_081614 | 5' arm 3' arm | ||
| 29979 | + | 228546 | 90 | 21.5 | -26.4 | YP_081614 | 5' arm 3' arm | ||
| 29978 | + | 227475 | 89 | 22 | -20.4 | YP_081613 | 5' arm 3' arm | ||
| 29977 | + | 227093 | 90 | 24 | -23.7 | YP_081613 | 5' arm 3' arm | ||
| 30243 | - | 227287 | 89 | 21.5 | -20.4 | YP_081613 | 5' arm 3' arm | ||
| 30244 | - | 227718 | 90 | 20.5 | -28.1 | YP_081613 | 5' arm 3' arm | ||
| 30242 | - | 226780 | 82 | 19.5 | -28.5 | YP_081613 | #hcmv-mir-US33 | 5' arm | |
| 30241 | - | 226400 | 89 | 20 | -20 | YP_081612 | 5' arm 3' arm | ||
| 29975 | + | 223136 | 86 | 22 | -19.8 | YP_081610 | 5' arm 3' arm | ||
| 29974 | + | 222483 | 89 | 23 | -25.1 | YP_081610 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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