miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1775	+	197112	81	25	-23.3		hcmv-mir-US5-2
1774	+	196978	90	26	-27.5		hcmv-mir-US5-1
1772	+	196078	89	27.5	-21		hcmv-mir-US4	5' arm      3' arm
29952	+	201362	89	27.5	-21		hcmv-mir-US4	5' arm      3' arm
2042	-	221478	82	19.5	-28.5	NP_040114	hcmv-mir-US33
1857	-	49578	90	28.5	-32.9		hcmv-mir-UL36
1552	+	27635	87	23	-19.6		hcmv-mir-UL22A	5' arm      3' arm
1745	+	164107	90	24	-21.8	NP_040051	hcmv-mir-UL112
29955	+	202396	81	25	-23.3		#hcmv-mir-US5-2	3' arm
29954	+	202262	90	26	-27.5		#hcmv-mir-US5-1	3' arm
30242	-	226780	82	19.5	-28.5	YP_081613	#hcmv-mir-US33	5' arm
30051	-	49928	90	28.5	-32.9		#hcmv-mir-UL36	5' arm
29728	+	27977	87	23	-19.6		#hcmv-mir-UL22A	5' arm      3' arm
29923	+	164504	90	24	-21.8	YP_081554	#hcmv-mir-UL112	3' arm
1550	+	25937	78	21.5	-25.9	NP_039954		5' arm      3' arm
1548	+	23960	85	20	-20.1	NP_039952		5' arm      3' arm
1549	+	25091	89	23	-25.3			5' arm      3' arm
1543	+	15313	88	21.5	-21.7	NP_039940		5' arm      3' arm
1540	+	7227	89	19	-21.9			5' arm      3' arm
29988	-	2252	90	20	-24.2	YP_081455		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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