miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
1857	-	49578	90	28.5	-32.9		hcmv-mir-UL36
1753	+	170294	88	28.5	-21.2	NP_783796		5' arm      3' arm
29929	+	170688	88	28.5	-21.2	YP_081561		5' arm      3' arm
30051	-	49928	90	28.5	-32.9		#hcmv-mir-UL36	5' arm
29964	+	216142	87	28	-29.7	YP_081607		5' arm      3' arm
29959	+	209317	87	28	-22.4	YP_081599		5' arm      3' arm
1784	+	210846	87	28	-29.7	NP_783806		5' arm      3' arm
1778	+	204032	87	28	-22.4	NP_040099		5' arm      3' arm
1725	+	149285	89	27.5	-29.9	NP_783791		5' arm      3' arm
29993	-	7597	90	27.5	-27.2			5' arm      3' arm
29905	+	149663	89	27.5	-29.9	YP_081548		5' arm      3' arm
1808	-	7180	90	27.5	-27.2			5' arm      3' arm
29952	+	201362	89	27.5	-21		hcmv-mir-US4	5' arm      3' arm
1772	+	196078	89	27.5	-21		hcmv-mir-US4	5' arm      3' arm
29987	-	1558	90	27.5	-23.2	YP_081455		5' arm      3' arm
1763	+	183218	90	27.5	-27.2			5' arm      3' arm
29745	+	41086	89	27	-26.8	YP_081491		5' arm      3' arm
1571	+	40740	89	27	-26.8	NP_039966		5' arm      3' arm
29795	+	87694	88	27	-30.3			5' arm      3' arm
1621	+	87421	86	26.5	-33.7			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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